WormBase Tree Display for Variation: WBVar01468943
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| WBVar01468943 | Evidence | Paper_evidence | WBPaper00040707 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01468943 | ||||
| Other_name | cewivar00126729 | |||||
| CE54583:p.Ser412= | ||||||
| CE28488:p.Ser398= | ||||||
| T23F2.1b.1:c.1236A>T | ||||||
| T23F2.1a.1:c.1194A>T | ||||||
| HGVSg | CHROMOSOME_X:g.5495427A>T | |||||
| Sequence_details | SMap | S_parent | Sequence | T23F2 | ||
| Flanking_sequences | CGAAATGATGGGAACGTTGGAGATCAGCTC | TCGGAGCCAACGACAACGCCGCTCGTGGAC | ||||
| Mapping_target | T23F2 | |||||
| Type_of_mutation | Substitution | a | t | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00004445 | From_analysis | WGS_Andersen | |||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_Andersen | ||||||
| WBStrain00004603 | From_analysis | WGS_Andersen | ||||
| WBStrain00005305 | From_analysis | WGS_Andersen | ||||
| WBStrain00005315 | From_analysis | WGS_Andersen | ||||
| WBStrain00006369 | From_analysis | WGS_Andersen | ||||
| Laboratory | QX | |||||
| Person | WBPerson1730 | |||||
| Analysis | Million_mutation_project_reanalysis | |||||
| WGS_Andersen | ||||||
| DB_info | Database | dbSNP_rs | rs | 193354245 | ||
| dbSNP_ss | ss | 295530164 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00044623 | ||||
| Transcript | T23F2.1b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | T23F2.1b.1:c.1236A>T | |||||
| HGVSp | CE54583:p.Ser412= | |||||
| cDNA_position | 1236 | |||||
| CDS_position | 1236 | |||||
| Protein_position | 412 | |||||
| Exon_number | 9/9 | |||||
| Codon_change | tcA/tcT | |||||
| Amino_acid_change | S | |||||
| T23F2.1a.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | T23F2.1a.1:c.1194A>T | |||||
| HGVSp | CE28488:p.Ser398= | |||||
| cDNA_position | 1194 | |||||
| CDS_position | 1194 | |||||
| Protein_position | 398 | |||||
| Exon_number | 8/9 | |||||
| Codon_change | tcA/tcT | |||||
| Amino_acid_change | S | |||||
| Reference | WBPaper00040707 | |||||
| Method | WGS_Andersen |
