WormBase Tree Display for Variation: WBVar01473767

WBVar01473767 Name: Public_name: tm1360
    Other_name: Y71F9B.10g.1:c.108_503+1del
      Y71F9B.10b.1:c.108_503+1del
      Y71F9B.10c.1:c.108_503+1del
      Y71F9B.10a.1:c.108_503+1del
    HGVSg: CHROMOSOME_I:g.2775423_2775975del
  Sequence_details: SMap: S_parent: Sequence: Y71F9B
    Flanking_sequences: tcctctgaaaaataaatattattagcttta tgctcccatcccagcttttctgcgctttgg
    Mapping_target: Y71F9B
    Source_location: 7 CHROMOSOME_I 2775422 2775976 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1360_external
      tm1360_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1360
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004946
    Transcript: Y71F9B.10g.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y71F9B.10g.1:c.108_503+1del
        cDNA_position: 130-?
        CDS_position: 108-?
        Protein_position: 36-?
        Intron_number: 2-5/16
        Exon_number: 2-5/17
      Y71F9B.10c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y71F9B.10c.1:c.108_503+1del
        cDNA_position: 127-?
        CDS_position: 108-?
        Protein_position: 36-?
        Intron_number: 2-5/15
        Exon_number: 2-5/16
      Y71F9B.10b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y71F9B.10b.1:c.108_503+1del
        cDNA_position: 126-?
        CDS_position: 108-?
        Protein_position: 36-?
        Intron_number: 2-5/16
        Exon_number: 2-5/17
      Y71F9B.10a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y71F9B.10a.1:c.108_503+1del
        cDNA_position: 123-?
        CDS_position: 108-?
        Protein_position: 36-?
        Intron_number: 2-5/15
        Exon_number: 2-5/16
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 73831/73832-74384/74385 (553 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele