WormBase Tree Display for Variation: WBVar01473815

WBVar01473815 Name: Public_name: tm6081
    HGVSg: CHROMOSOME_II:g.471048_471332del
  Sequence_details: SMap: S_parent: Sequence: W10D9
    Flanking_sequences: aaacggcaaattttcagcttttgcacataa cgaaaaacaatgtaaaaacaacaaaaaagg
    Mapping_target: W10D9
    Source_location: 7 CHROMOSOME_II 471047 471333 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm6081_external
      tm6081_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6081
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00021073
    Transcript: W07E6.1a.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 2138-?
        Exon_number: 11/11
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Paper_evidence: WBPaper00060738
        Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
          WBPerson29150
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
        Penetrance: Complete: Paper_evidence: WBPaper00060738
              Curator_confirmed: WBPerson29150
        Recessive: Paper_evidence: WBPaper00060738
          Curator_confirmed: WBPerson29150
        Variation_effect: Loss_of_function_undetermined_extent: Paper_evidence: WBPaper00060738
            Curator_confirmed: WBPerson29150
        Phenotype_assay: Control_strain: WBStrain00000001 Paper_evidence: WBPaper00060738
              Curator_confirmed: WBPerson29150
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Reference: WBPaper00060738
  Remark: 22750/22751-23035/23036 (285 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele