WormBase Tree Display for Variation: WBVar01474219

WBVar01474219 Name: Public_name: tm6328
    Other_name: R06A4.4b.1:c.370+16_632del
      R06A4.4c.1:c.1762+16_2024del
      R06A4.4a.1:c.1762+16_2024del
    HGVSg: CHROMOSOME_II:g.14367737_14368038del
  Sequence_details: SMap: S_parent: Sequence: R06A4
    Flanking_sequences: ctgcaattgtttcaggttggtaaaagaaat cagacaatcgtgcttcgcgttactcggaga
    Mapping_target: R06A4
    Source_location: 7 CHROMOSOME_II 14367736 14368039 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm6328_external
      tm6328_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6328
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002076
    Transcript: R06A4.4a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R06A4.4a.1:c.1762+16_2024del
        cDNA_position: ?-2062
        CDS_position: ?-2024
        Protein_position: ?-675
        Intron_number: 4/8
        Exon_number: 5/9
      R06A4.4b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R06A4.4b.1:c.370+16_632del
        cDNA_position: ?-670
        CDS_position: ?-632
        Protein_position: ?-211
        Intron_number: 3/7
        Exon_number: 4/8
      R06A4.4c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R06A4.4c.1:c.1762+16_2024del
        cDNA_position: ?-2062
        CDS_position: ?-2024
        Protein_position: ?-675
        Intron_number: 4/8
        Exon_number: 5/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 16883/16884-17185/17186 (302 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele