WormBase Tree Display for Variation: WBVar01474361

WBVar01474361 Name: Public_name: tm6342
    Other_name: Y54G2A.17b.1:c.717+2_718-241del
      Y54G2A.17a.3:c.657+2_658-241del
      Y54G2A.17a.2:c.657+2_658-241del
      Y54G2A.17a.1:c.657+2_658-241del
    HGVSg: CHROMOSOME_IV:g.2881121_2881645del
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: aaaaagttatgacgcctcaaaaaatggcctaa cctcagccggcgacgagaatgagcagatga
    Mapping_target: Y54G2A
    Source_location: 7 CHROMOSOME_IV 2881120 2881646 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm6342_external
      tm6342_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6342
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00021882
    Transcript: Y54G2A.17a.3 VEP_consequence: splice_donor_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y54G2A.17a.3:c.657+2_658-241del
        Intron_number: 2/7
      Y54G2A.17b.1 VEP_consequence: splice_donor_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y54G2A.17b.1:c.717+2_718-241del
        Intron_number: 3/7
      Y54G2A.17c.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 659-?
        CDS_position: 659-?
        Protein_position: 220-?
        Exon_number: 1/1
      Y54G2A.17a.2 VEP_consequence: splice_donor_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y54G2A.17a.2:c.657+2_658-241del
        Intron_number: 3/8
      Y54G2A.17a.1 VEP_consequence: splice_donor_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y54G2A.17a.1:c.657+2_658-241del
        Intron_number: 3/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 130899/130900-131424/131425 (525 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele