WormBase Tree Display for Variation: WBVar01474448

WBVar01474448 Name: Public_name: tm6437
    Other_name: F52C12.4b.1:c.433-148_604delinsAAGAA
      F52C12.4f.1:c.433-148_604delinsAAGAA
      F52C12.4g.1:c.433-148_604delinsAAGAA
      F52C12.4d.1:c.433-148_604delinsAAGAA
      F52C12.4c.1:c.433-148_604delinsAAGAA
      F52C12.4h.1:c.433-148_604delinsAAGAA
      F52C12.4a.1:c.433-148_604delinsAAGAA
      F52C12.4e.1:c.433-148_604delinsAAGAA
    HGVSg: CHROMOSOME_IV:g.1927503_1927822delinsAAGAA
  Sequence_details: SMap: S_parent: Sequence: F52C12
    Flanking_sequences: cctatgactatcagtagttcacatttagtcacgcgtagggggaacctct ataagaaatcacagggaacagcgaaacggt
    Mapping_target: F52C12
    Source_location: 7 CHROMOSOME_IV 1927502 1927823 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: AAGAA
      Deletion
    PCR_product: tm6437_external
      tm6437_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6437
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00018681
    Transcript: F52C12.4d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52C12.4d.1:c.433-148_604delinsAAGAA
        cDNA_position: ?-604
        CDS_position: ?-604
        Protein_position: ?-202
        Intron_number: 3/21
        Exon_number: 4/22
      F52C12.4h.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52C12.4h.1:c.433-148_604delinsAAGAA
        cDNA_position: ?-604
        CDS_position: ?-604
        Protein_position: ?-202
        Intron_number: 3/21
        Exon_number: 4/22
      F52C12.4g.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52C12.4g.1:c.433-148_604delinsAAGAA
        cDNA_position: ?-610
        CDS_position: ?-604
        Protein_position: ?-202
        Intron_number: 4/23
        Exon_number: 5/24
      F52C12.4c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52C12.4c.1:c.433-148_604delinsAAGAA
        cDNA_position: ?-604
        CDS_position: ?-604
        Protein_position: ?-202
        Intron_number: 3/21
        Exon_number: 4/22
      F52C12.4f.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52C12.4f.1:c.433-148_604delinsAAGAA
        cDNA_position: ?-604
        CDS_position: ?-604
        Protein_position: ?-202
        Intron_number: 3/20
        Exon_number: 4/21
      F52C12.4b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52C12.4b.1:c.433-148_604delinsAAGAA
        cDNA_position: ?-611
        CDS_position: ?-604
        Protein_position: ?-202
        Intron_number: 4/22
        Exon_number: 5/23
      F52C12.4a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52C12.4a.1:c.433-148_604delinsAAGAA
        cDNA_position: ?-604
        CDS_position: ?-604
        Protein_position: ?-202
        Intron_number: 3/21
        Exon_number: 4/22
      F52C12.4e.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52C12.4e.1:c.433-148_604delinsAAGAA
        cDNA_position: ?-611
        CDS_position: ?-604
        Protein_position: ?-202
        Intron_number: 4/22
        Exon_number: 5/23
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 9536/9537-AAGAA-9856/9857 (320 bp deletion + 5 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele