WormBase Tree Display for Variation: WBVar01513941
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WBVar01513941 | Name | Public_name | WBVar01513941 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00036176 | |||||||
Y54G2A.17b.1:c.717+57T>C | ||||||||
Y54G2A.17c.1:c.714T>C | ||||||||
Y54G2A.17a.1:c.657+57T>C | ||||||||
CE33887:p.Phe238= | ||||||||
Y54G2A.17a.3:c.657+57T>C | ||||||||
Y54G2A.17a.2:c.657+57T>C | ||||||||
HGVSg | CHROMOSOME_IV:g.2881590A>G | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | CGACTACACCATTTTTAATATCGATTCTCA | AACCACAAAGATGAATTCAAAGCAAAATCG | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2881588 | 2881588 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | A | G | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain (11) | ||||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021882 | ||||||
Transcript | Y54G2A.17a.3 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.17a.3:c.657+57T>C | |||||||
Intron_number | 2/7 | |||||||
Y54G2A.17b.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.17b.1:c.717+57T>C | |||||||
Intron_number | 3/7 | |||||||
Y54G2A.17c.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | Y54G2A.17c.1:c.714T>C | |||||||
HGVSp | CE33887:p.Phe238= | |||||||
cDNA_position | 714 | |||||||
CDS_position | 714 | |||||||
Protein_position | 238 | |||||||
Exon_number | 1/1 | |||||||
Codon_change | ttT/ttC | |||||||
Amino_acid_change | F | |||||||
Y54G2A.17a.2 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.17a.2:c.657+57T>C | |||||||
Intron_number | 3/8 | |||||||
Y54G2A.17a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.17a.1:c.657+57T>C | |||||||
Intron_number | 3/8 | |||||||
Method | WGS_Flibotte |