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WormBase Tree Display for Variation: WBVar01513941

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Name Class

WBVar01513941NamePublic_nameWBVar01513941
Other_namecewivar00036176
Y54G2A.17b.1:c.717+57T>C
Y54G2A.17c.1:c.714T>C
Y54G2A.17a.1:c.657+57T>C
CE33887:p.Phe238=
Y54G2A.17a.3:c.657+57T>C
Y54G2A.17a.2:c.657+57T>C
HGVSgCHROMOSOME_IV:g.2881590A>G
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesCGACTACACCATTTTTAATATCGATTCTCAAACCACAAAGATGAATTCAAAGCAAAATCG
Mapping_targetY54G2A
Source_location225CHROMOSOME_IV28815882881588From_analysisMillion_mutation_project_reanalysis
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeNatural_variant
OriginSpeciesCaenorhabditis elegans
Strain (11)
LaboratoryVC
AnalysisMillion_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021882
TranscriptY54G2A.17a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.3:c.657+57T>C
Intron_number2/7
Y54G2A.17b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17b.1:c.717+57T>C
Intron_number3/7
Y54G2A.17c.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY54G2A.17c.1:c.714T>C
HGVSpCE33887:p.Phe238=
cDNA_position714
CDS_position714
Protein_position238
Exon_number1/1
Codon_changettT/ttC
Amino_acid_changeF
Y54G2A.17a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.2:c.657+57T>C
Intron_number3/8
Y54G2A.17a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.1:c.657+57T>C
Intron_number3/8
MethodWGS_Flibotte