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WormBase Tree Display for Variation: WBVar01580544

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Name Class

WBVar01580544NamePublic_nameWBVar01580544
Other_namecewivar00203609
Y54G2A.36.2:c.-294-1091C>T
Y54G2A.36.3:c.-283-1102C>T
Y54G2A.36.1:c.-320-1065C>T
Y54G2A.36.5:c.-1385C>T
Y54G2A.36.4:c.-248-1091C>T
Y54G2A.20:n.484G>A
HGVSgCHROMOSOME_IV:g.2899808C>T
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesAATTTTCAGACAGAAATACCTTTAAAAATGCGTGCACACTGCACTACCAGTGACTTTCTT
Mapping_targetY54G2A
Source_location225CHROMOSOME_IV28998062899806From_analysisMillion_mutation_project_reanalysis
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeNatural_variant
OriginSpeciesCaenorhabditis elegans
Strain (15)
LaboratoryVC
AnalysisMillion_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021898
WBGene00021885
TranscriptY54G2A.36.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.2:c.-294-1091C>T
Intron_number1/4
Y54G2A.36.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.1:c.-320-1065C>T
Intron_number1/4
Y54G2A.36.5VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScY54G2A.36.5:c.-1385C>T
cDNA_position1705
Exon_number1/4
Y54G2A.36.4VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.4:c.-248-1091C>T
Intron_number1/5
Y54G2A.36.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.3:c.-283-1102C>T
Intron_number1/4
PseudogeneY54G2A.20VEP_consequencenon_coding_transcript_exon_variant
VEP_impactMODIFIER
HGVScY54G2A.20:n.484G>A
cDNA_position484
Exon_number2/14
MethodWGS_Flibotte