WormBase Tree Display for Variation: WBVar01580544
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WBVar01580544 | Name | Public_name | WBVar01580544 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00203609 | |||||||
Y54G2A.36.2:c.-294-1091C>T | ||||||||
Y54G2A.36.3:c.-283-1102C>T | ||||||||
Y54G2A.36.1:c.-320-1065C>T | ||||||||
Y54G2A.36.5:c.-1385C>T | ||||||||
Y54G2A.36.4:c.-248-1091C>T | ||||||||
Y54G2A.20:n.484G>A | ||||||||
HGVSg | CHROMOSOME_IV:g.2899808C>T | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | AATTTTCAGACAGAAATACCTTTAAAAATG | CGTGCACACTGCACTACCAGTGACTTTCTT | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2899806 | 2899806 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | C | T | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain (15) | ||||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021898 | ||||||
WBGene00021885 | ||||||||
Transcript | Y54G2A.36.2 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.36.2:c.-294-1091C>T | |||||||
Intron_number | 1/4 | |||||||
Y54G2A.36.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.36.1:c.-320-1065C>T | |||||||
Intron_number | 1/4 | |||||||
Y54G2A.36.5 | VEP_consequence | 5_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.36.5:c.-1385C>T | |||||||
cDNA_position | 1705 | |||||||
Exon_number | 1/4 | |||||||
Y54G2A.36.4 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.36.4:c.-248-1091C>T | |||||||
Intron_number | 1/5 | |||||||
Y54G2A.36.3 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.36.3:c.-283-1102C>T | |||||||
Intron_number | 1/4 | |||||||
Pseudogene | Y54G2A.20 | VEP_consequence | non_coding_transcript_exon_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.20:n.484G>A | |||||||
cDNA_position | 484 | |||||||
Exon_number | 2/14 | |||||||
Method | WGS_Flibotte |