WormBase Tree Display for Variation: WBVar01702885
expand all nodes | collapse all nodes | view schema
WBVar01702885 | Name | Public_name | WBVar01702885 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00400230 | |||||||
Y54G2A.17a.1:c.1360C>T | ||||||||
CE46281:p.Pro474Ser | ||||||||
Y54G2A.17a.3:c.1360C>T | ||||||||
Y54G2A.17a.2:c.1360C>T | ||||||||
CE46116:p.Pro454Ser | ||||||||
Y54G2A.17b.1:c.1420C>T | ||||||||
HGVSg | CHROMOSOME_IV:g.2875203G>A | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | GTTTTTCCATCAAATTAACCACCTCAAACG | ATGCCTGCAAAGAATCTGTTGATTGGGTTG | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2875201 | 2875201 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | G | A | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021882 | ||||||
Transcript | Y54G2A.17a.3 | VEP_consequence | missense_variant | |||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.17a.3:c.1360C>T | |||||||
HGVSp | CE46116:p.Pro454Ser | |||||||
cDNA_position | 1405 | |||||||
CDS_position | 1360 | |||||||
Protein_position | 454 | |||||||
Exon_number | 5/8 | |||||||
Codon_change | Ccg/Tcg | |||||||
Amino_acid_change | P/S | |||||||
Y54G2A.17b.1 | VEP_consequence | missense_variant | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.17b.1:c.1420C>T | |||||||
HGVSp | CE46281:p.Pro474Ser | |||||||
cDNA_position | 1456 | |||||||
CDS_position | 1420 | |||||||
Protein_position | 474 | |||||||
Exon_number | 6/8 | |||||||
Codon_change | Ccg/Tcg | |||||||
Amino_acid_change | P/S | |||||||
Y54G2A.17a.2 | VEP_consequence | missense_variant | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.17a.2:c.1360C>T | |||||||
HGVSp | CE46116:p.Pro454Ser | |||||||
cDNA_position | 1501 | |||||||
CDS_position | 1360 | |||||||
Protein_position | 454 | |||||||
Exon_number | 6/9 | |||||||
Codon_change | Ccg/Tcg | |||||||
Amino_acid_change | P/S | |||||||
Y54G2A.17a.1 | VEP_consequence | missense_variant | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.17a.1:c.1360C>T | |||||||
HGVSp | CE46116:p.Pro454Ser | |||||||
cDNA_position | 1450 | |||||||
CDS_position | 1360 | |||||||
Protein_position | 454 | |||||||
Exon_number | 6/9 | |||||||
Codon_change | Ccg/Tcg | |||||||
Amino_acid_change | P/S | |||||||
Method | WGS_Flibotte |