WormBase Tree Display for Variation: WBVar01726616
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WBVar01726616 | Name | Public_name | WBVar01726616 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00424992 | |||||||
CE48894:p.Ser6Ter | ||||||||
Y54G2A.49b.1:c.17C>A | ||||||||
Y54G2A.6a.1:c.-151-994G>T | ||||||||
HGVSg | CHROMOSOME_IV:g.2853245G>T | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | AAAAATTGAAGAAGGCATGCCAATATTGTT | AAATTTTTAGAAGCATTTTTAGAAATAAAT | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2853243 | 2853243 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | G | T | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021872 | ||||||
WBGene00044492 | ||||||||
Transcript | Y54G2A.49b.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | |||||||
HGVSc | Y54G2A.49b.1:c.17C>A | |||||||
HGVSp | CE48894:p.Ser6Ter | |||||||
cDNA_position | 20 | |||||||
CDS_position | 17 | |||||||
Protein_position | 6 | |||||||
Exon_number | 2/5 | |||||||
Codon_change | tCa/tAa | |||||||
Amino_acid_change | S/* | |||||||
Y54G2A.6a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.6a.1:c.-151-994G>T | |||||||
Intron_number | 1/6 | |||||||
Method | WGS_Flibotte |