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WormBase Tree Display for Variation: WBVar01922347

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Name Class

WBVar01922347NamePublic_nameWBVar01922347
Other_namecewivar00640757
Y54G2A.36.3:c.-284+1040del
Y54G2A.36.1:c.-321+1040del
Y54G2A.36.4:c.-249+1040del
Y54G2A.36.5:c.-2351del
Y54G2A.20:n.1176+8del
Y54G2A.36.2:c.-295+1040del
HGVSgCHROMOSOME_IV:g.2898842del
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesAACTTTTGAAAGCTAGGCTATCAGATGAAATTTTTACAATCAGCAAGGCTTTAGCTCTTT
Mapping_targetY54G2A
Source_location225CHROMOSOME_IV28988402898840From_analysisMillion_mutation_project_reanalysis
Type_of_mutationDeletion
SeqStatusSequenced
Variation_typeNatural_variant
OriginSpeciesCaenorhabditis elegans
Strain (27)
LaboratoryVC
AnalysisMillion_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021898
WBGene00021885
TranscriptY54G2A.36.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.2:c.-295+1040del
Intron_number1/4
Y54G2A.36.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.1:c.-321+1040del
Intron_number1/4
Y54G2A.36.5VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScY54G2A.36.5:c.-2351del
cDNA_position739
Exon_number1/4
Y54G2A.36.4VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.4:c.-249+1040del
Intron_number1/5
Y54G2A.36.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.3:c.-284+1040del
Intron_number1/4
PseudogeneY54G2A.20VEP_consequencesplice_region_variant,intron_variant,non_coding_transcript_variant
VEP_impactLOW
HGVScY54G2A.20:n.1176+8del
Intron_number6/13
MethodWGS_Flibotte