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WormBase Tree Display for Variation: WBVar02020219

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Name Class

WBVar02020219NamePublic_nameWBVar02020219
Other_namecewivar00748727
Y54G2A.36.1:c.-321+1222del
Y54G2A.20:n.1007-5del
Y54G2A.36.5:c.-2169del
Y54G2A.36.3:c.-284+1222del
Y54G2A.36.4:c.-249+1222del
Y54G2A.36.2:c.-295+1222del
HGVSgCHROMOSOME_IV:g.2899024del
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesGAACTCTGGCAGTAATTTTTTGATTTCTCCAAAAAAAATTGCTATTTCTGATGATGTTGT
Mapping_targetY54G2A
Source_location225CHROMOSOME_IV28990222899022From_analysisMillion_mutation_project_reanalysis
Type_of_mutationDeletion
SeqStatusSequenced
Variation_typeNatural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00023139From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
WBStrain00027662From_analysisMillion_mutation_project_reanalysis
LaboratoryVC
AnalysisMillion_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021898
WBGene00021885
TranscriptY54G2A.36.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.2:c.-295+1222del
Intron_number1/4
Y54G2A.36.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.1:c.-321+1222del
Intron_number1/4
Y54G2A.36.5VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScY54G2A.36.5:c.-2169del
cDNA_position921
Exon_number1/4
Y54G2A.36.4VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.4:c.-249+1222del
Intron_number1/5
Y54G2A.36.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.36.3:c.-284+1222del
Intron_number1/4
PseudogeneY54G2A.20VEP_consequencesplice_region_variant,intron_variant,non_coding_transcript_variant
VEP_impactLOW
HGVScY54G2A.20:n.1007-5del
Intron_number5/13
MethodWGS_Flibotte