WormBase Tree Display for Variation: WBVar02122950

WBVar02122950 Name: Public_name: WBVar02122950
    Other_name: cewivar00853873
    HGVSg: CHROMOSOME_IV:g.2819003_2829002del
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: AACATTTTTAGGATGCGTTTAATTTTGAAA GAGTAAAATAAATGGTGAAGCCACAGAGAGTAAAATAAAT
    Mapping_target: Y54G2A
    Source_location: 225 CHROMOSOME_IV 2819001 2829000 From_analysis: Million_mutation_project_reanalysis
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00023192 From_analysis: Million_mutation_project_reanalysis
    Laboratory: VC
    Analysis: Million_mutation_project_reanalysis
    Status: Live
  Affects: Gene: WBGene00043062
      WBGene00021878
      WBGene00023484
      WBGene00171446
    Transcript: Y54G2A.37.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-10/11
        Exon_number: 1-12/12
      Y54G2A.39b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-7/8
        Exon_number: 1-9/9
      Y54G2A.39a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-5/5
        Exon_number: 1-6/6
      Y54G2A.13.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2/10
        Exon_number: 1-2/11
      Y54G2A.55
  Remark: The boundaries of this variant have been identified only approximately
    This allele is a copy number variation determined from whole-genome sequence data, and should be assumed to be non-homozygous
  Method: WGS_Flibotte