WormBase Tree Display for Variation: WBVar02123768

WBVar02123768 Name: Public_name: WBVar02123768
    Other_name: cewivar00854691
    HGVSg: CHROMOSOME_IV:g.2851003_2861002del
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: AATCACAAAAGAATACGCCGAGCACAATTG CCGACCACAGACCAATAAGATTATGGATCT
    Mapping_target: Y54G2A
    Source_location: 225 CHROMOSOME_IV 2851001 2861000 From_analysis: Million_mutation_project_reanalysis
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00022887 From_analysis: Million_mutation_project_reanalysis
    Laboratory: VC
    Analysis: Million_mutation_project_reanalysis
    Status: Live
  Affects: Gene: WBGene00044495
      WBGene00021872
      WBGene00021881
      WBGene00044492
    Transcript: Y54G2A.49b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-3/4
        Exon_number: 1-5/5
      Y54G2A.16c.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-2/2
        Exon_number: 1-3/3
      Y54G2A.16b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-4/5
        Exon_number: 2-6/6
      Y54G2A.40.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1667-?
        CDS_position: 1599-?
        Protein_position: 533-?
        Exon_number: 9/9
      Y54G2A.6a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 118-?
        Intron_number: 1-5/6
        Exon_number: 1-7/7
      Y54G2A.16a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-3/4
        Exon_number: 1-5/5
      Y54G2A.6b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1/1
        Exon_number: 1-2/2
      Y54G2A.49a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1/2
        Exon_number: 1-3/3
  Remark: The boundaries of this variant have been identified only approximately
    This allele is a copy number variation determined from whole-genome sequence data, and should be assumed to be non-homozygous
  Method: WGS_Flibotte