WormBase Tree Display for Variation: WBVar02125209

WBVar02125209 Name: Public_name: tm6621
    Other_name: F13H8.10c.3:c.163-26_556del
      F13H8.10c.1:c.163-26_556del
      F13H8.10b.1:c.385-26_778del
      F13H8.10c.2:c.163-26_556del
      F13H8.10a.1:c.2134-26_2527del
      F13H8.10c.5:c.163-26_556del
      F13H8.10c.4:c.163-26_556del
      F13H8.10c.6:c.163-26_556del
    HGVSg: CHROMOSOME_II:g.6277880_6278344del
  Sequence_details: SMap: S_parent: Sequence: F13H8
    Flanking_sequences: cggtgagaaaattaaatattgaacaaaaaa tctctgatgcaacaactcaacaattgatag
    Mapping_target: F13H8
    Source_location: 7 CHROMOSOME_II 6277879 6278345 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm6621_external
      tm6621_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6621
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000259
    Transcript: F13H8.10c.5 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13H8.10c.5:c.163-26_556del
        cDNA_position: ?-1735
        CDS_position: ?-556
        Protein_position: ?-186
        Intron_number: 8-9/13
        Exon_number: 9-10/14
      F13H8.10c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13H8.10c.1:c.163-26_556del
        cDNA_position: ?-723
        CDS_position: ?-556
        Protein_position: ?-186
        Intron_number: 3-4/8
        Exon_number: 4-5/9
      F13H8.10c.6 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13H8.10c.6:c.163-26_556del
        cDNA_position: ?-803
        CDS_position: ?-556
        Protein_position: ?-186
        Intron_number: 4-5/10
        Exon_number: 5-6/11
      F13H8.10c.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13H8.10c.2:c.163-26_556del
        cDNA_position: ?-642
        CDS_position: ?-556
        Protein_position: ?-186
        Intron_number: 2-3/8
        Exon_number: 3-4/9
      F13H8.10b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13H8.10b.1:c.385-26_778del
        cDNA_position: ?-790
        CDS_position: ?-778
        Protein_position: ?-260
        Intron_number: 3-4/9
        Exon_number: 4-5/10
      F13H8.10a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13H8.10a.1:c.2134-26_2527del
        cDNA_position: ?-2576
        CDS_position: ?-2527
        Protein_position: ?-843
        Intron_number: 14-15/20
        Exon_number: 15-16/21
      F13H8.10c.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13H8.10c.3:c.163-26_556del
        cDNA_position: ?-2487
        CDS_position: ?-556
        Protein_position: ?-186
        Intron_number: 13-14/19
        Exon_number: 14-15/20
      F13H8.10c.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F13H8.10c.4:c.163-26_556del
        cDNA_position: ?-1960
        CDS_position: ?-556
        Protein_position: ?-186
        Intron_number: 9-10/14
        Exon_number: 10-11/15
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 24954/24955-25419/25420 (465 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele