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WormBase Tree Display for Variation: WBVar02125224

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Name Class

WBVar02125224NamePublic_nametm6554
Other_nameBE10.2.2:c.449-259_449-4del
BE10.2.1:c.449-259_449-4del
HGVSgCHROMOSOME_III:g.12796735_12796990del
Sequence_detailsSMapS_parentSequenceBE10
Flanking_sequencestgtgaagaccccagaagaagccggcttctgtaaatttaatttttctgataaaatcatatt
Mapping_targetBE10
Source_location7CHROMOSOME_III1279673412796991Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm6554_external
tm6554_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq6554
NBP_allele
StatusLive
AffectsGeneWBGene00007210
TranscriptBE10.2.2VEP_consequencesplice_region_variant,intron_variant
VEP_impactLOW
HGVScBE10.2.2:c.449-259_449-4del
Intron_number5/10
BE10.2.1VEP_consequencesplice_region_variant,intron_variant
VEP_impactLOW
HGVScBE10.2.1:c.449-259_449-4del
Intron_number4/9
IsolationMutagenTMP/UV
GeneticsMapIII
DescriptionPhenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as homozygous viable by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
Remark10052/10053-10308/10309 (256 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele