WormBase Tree Display for Variation: WBVar02125238

WBVar02125238 Name: Public_name: tm6569
    Other_name: C38D4.5b.1:c.1202_1309-112delinsTC
      C38D4.5a.1:c.1208_1315-112delinsTC
    HGVSg: CHROMOSOME_III:g.4798999_4799458delinsTC
  Sequence_details: SMap: S_parent: Sequence: C38D4
    Flanking_sequences: gcggtgatttggaaagaagtgaaaatgatg atcagctcagcctaaacataatgtttcaaa
    Mapping_target: C38D4
    Source_location: 7 CHROMOSOME_III 4798998 4799459 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TC
      Deletion
    PCR_product: tm6569_external
      tm6569_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6569
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00008006
    Transcript: C38D4.5a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C38D4.5a.1:c.1208_1315-112delinsTC
        cDNA_position: 1283-?
        CDS_position: 1208-?
        Protein_position: 403-?
        Intron_number: 6/13
        Exon_number: 6/14
      C38D4.5b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C38D4.5b.1:c.1202_1309-112delinsTC
        cDNA_position: 1272-?
        CDS_position: 1202-?
        Protein_position: 401-?
        Intron_number: 6/13
        Exon_number: 6/14
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 16662/16663-TC-17122/17123 (460 bp deletion + 2 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele