WormBase Tree Display for Variation: WBVar02125449
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| WBVar02125449 | Name | Public_name | ok3744 | ||
|---|---|---|---|---|---|
| Other_name | R06A4.9b.1:c.679_1366del | ||||
| R06A4.9c.1:c.*948_*1635del | |||||
| CE21113:p.Ser432HisfsTer86 | |||||
| CE48640:p.Ser227HisfsTer86 | |||||
| R06A4.9a.1:c.1294_1981del | |||||
| HGVSg | CHROMOSOME_II:g.14360303_14360990del | ||||
| Sequence_details | SMap | S_parent | Sequence | R06A4 | |
| Flanking_sequences | ggcgacactgttgaagacatttttggattg | catctcagcaaggacctcctccacgacaaa | |||
| Mapping_target | R06A4 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK3744_external | ||||
| OK3744_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037726 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00011051 | |||
| Transcript | R06A4.9b.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | R06A4.9b.1:c.679_1366del | ||||
| HGVSp | CE48640:p.Ser227HisfsTer86 | ||||
| cDNA_position | 679-1366 | ||||
| CDS_position | 679-1366 | ||||
| Protein_position | 227-456 | ||||
| Exon_number | 3/4 | ||||
| Codon_change | TCCAACACCAATATGATTGGACATTTGGACAAAGAAAGAGAACCGCGAATGGCACCACCGAAGCCAAGTATCGAGACTCAAGAAACCTACAGGCCGGACACATTTATTCCTGGAATGGGATTGGATGAACATCTTTATGAACAGCTCAATAGAGATCATAACATGATGACAACTGATTCGACTCTACTGGTACCTGATGATCTTACAAGACAGAACTTTGCTCCCATGATCGGTGCAAAGCGAACGTTGATCAAGCAACCGCCTGCCAAGAAAGCACAGAGGCAATTCGAGAGAATGTGGAATAATTCCAAAGGAATTGGTGCGGGTTCTGACGATTTCACAACGATGAAAGGTGGATTGGGACGTGAAGACGCCGAAGGTGCACAGTTCGGACCTTCAAAATCGTTTCTGGGACCTCCGACGACGGGAGGATCGCTGTTAGGTCCAAGTCAGCCAAGACCTCAAGAGTTTCGATCTGTACCTCCACCACAGCAGCAGCAAGGTCCACCTCCAAATTGGAGACATCAGGGGCCTCCGATGTCTGGGCCAGGACAAGGATACGGACCGCCGGGTAGAATGGGTGGAAATCAAGGAGGATGGCAAAGGCCTCCACCACAAGGATCCTATGGAGGGCAGGGACCACCACAAGGGTCGTATGGAGGACAAGGGACACTACAAGGATCCTATGca/ca | ||||
| Amino_acid_change | SNTNMIGHLDKEREPRMAPPKPSIETQETYRPDTFIPGMGLDEHLYEQLNRDHNMMTTDSTLLVPDDLTRQNFAPMIGAKRTLIKQPPAKKAQRQFERMWNNSKGIGAGSDDFTTMKGGLGREDAEGAQFGPSKSFLGPPTTGGSLLGPSQPRPQEFRSVPPPQQQQGPPPNWRHQGPPMSGPGQGYGPPGRMGGNQGGWQRPPPQGSYGGQGPPQGSYGGQGTLQGSYA/X | ||||
| R06A4.9a.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | R06A4.9a.1:c.1294_1981del | ||||
| HGVSp | CE21113:p.Ser432HisfsTer86 | ||||
| cDNA_position | 1415-2102 | ||||
| CDS_position | 1294-1981 | ||||
| Protein_position | 432-661 | ||||
| Exon_number | 7/9 | ||||
| Codon_change | TCCAACACCAATATGATTGGACATTTGGACAAAGAAAGAGAACCGCGAATGGCACCACCGAAGCCAAGTATCGAGACTCAAGAAACCTACAGGCCGGACACATTTATTCCTGGAATGGGATTGGATGAACATCTTTATGAACAGCTCAATAGAGATCATAACATGATGACAACTGATTCGACTCTACTGGTACCTGATGATCTTACAAGACAGAACTTTGCTCCCATGATCGGTGCAAAGCGAACGTTGATCAAGCAACCGCCTGCCAAGAAAGCACAGAGGCAATTCGAGAGAATGTGGAATAATTCCAAAGGAATTGGTGCGGGTTCTGACGATTTCACAACGATGAAAGGTGGATTGGGACGTGAAGACGCCGAAGGTGCACAGTTCGGACCTTCAAAATCGTTTCTGGGACCTCCGACGACGGGAGGATCGCTGTTAGGTCCAAGTCAGCCAAGACCTCAAGAGTTTCGATCTGTACCTCCACCACAGCAGCAGCAAGGTCCACCTCCAAATTGGAGACATCAGGGGCCTCCGATGTCTGGGCCAGGACAAGGATACGGACCGCCGGGTAGAATGGGTGGAAATCAAGGAGGATGGCAAAGGCCTCCACCACAAGGATCCTATGGAGGGCAGGGACCACCACAAGGGTCGTATGGAGGACAAGGGACACTACAAGGATCCTATGca/ca | ||||
| Amino_acid_change | SNTNMIGHLDKEREPRMAPPKPSIETQETYRPDTFIPGMGLDEHLYEQLNRDHNMMTTDSTLLVPDDLTRQNFAPMIGAKRTLIKQPPAKKAQRQFERMWNNSKGIGAGSDDFTTMKGGLGREDAEGAQFGPSKSFLGPPTTGGSLLGPSQPRPQEFRSVPPPQQQQGPPPNWRHQGPPMSGPGQGYGPPGRMGGNQGGWQRPPPQGSYGGQGPPQGSYGGQGTLQGSYA/X | ||||
| R06A4.9c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R06A4.9c.1:c.*948_*1635del | ||||
| cDNA_position | 1729-2416 | ||||
| Exon_number | 7/8 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
