WormBase Tree Display for Variation: WBVar02125511

WBVar02125511 Name: Public_name: tm6667
    Other_name: F54D5.12.2:c.-3+5128_-2-5052del
    HGVSg: CHROMOSOME_II:g.11545684_11546835del
  Sequence_details: SMap: S_parent: Sequence: F54D5
    Flanking_sequences: acctgttactggttaatatttcaaaaattc tttcaggctgactggaaaaggacttccaaa
    Mapping_target: F54D5
    Source_location: 7 CHROMOSOME_II 11545683 11546836 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm6667_external
      tm6667_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6667
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00001031
      WBGene00010055
    Transcript: F54D5.8.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-3/4
        Exon_number: 1-3/5
      F54D5.12.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F54D5.12.2:c.-3+5128_-2-5052del
        Intron_number: 1/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 5617/5618-6769/6770 (1152 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele