WormBase Tree Display for Variation: WBVar02125571

WBVar02125571 Name: Public_name: tm6705
    Other_name: ZK622.3d.4:c.1-67_277delinsATCTTGGGAACATCAA
      ZK622.3b.1:c.69-63_349delinsATCTTGGGAACATCAA
      ZK622.3a.1:c.42-63_322delinsATCTTGGGAACATCAA
      ZK622.3d.2:c.-4-63_277delinsATCTTGGGAACATCAA
      ZK622.3a.2:c.42-63_322delinsATCTTGGGAACATCAA
      ZK622.3d.3:c.-3-64_277delinsATCTTGGGAACATCAA
    HGVSg: CHROMOSOME_II:g.5279899_5280342delinsTTGATGTTCCCAAGAT
  Sequence_details: SMap: S_parent: Sequence: ZK622
    Flanking_sequences: cgacttgatagttgatgttcccaagatgag cacttgtttttctcctggtcaccaaagcaa
    Mapping_target: ZK622
    Source_location: 7 CHROMOSOME_II 5279898 5280343 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TTGATGTTCCCAAGAT
      Deletion
    PCR_product: tm6705_external
      tm6705_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6705
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00022781
    Transcript: ZK622.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK622.3b.1:c.69-63_349delinsATCTTGGGAACATCAA
        cDNA_position: ?-371
        CDS_position: ?-349
        Protein_position: ?-117
        Intron_number: 2-3/6
        Exon_number: 3-4/7
      ZK622.3d.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK622.3d.4:c.1-67_277delinsATCTTGGGAACATCAA
        cDNA_position: ?-326
        CDS_position: ?-277
        Protein_position: ?-93
        Intron_number: 1-2/4
        Exon_number: 2-3/5
      ZK622.3a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK622.3a.2:c.42-63_322delinsATCTTGGGAACATCAA
        cDNA_position: ?-336
        CDS_position: ?-322
        Protein_position: ?-108
        Intron_number: 2-3/6
        Exon_number: 3-4/7
      ZK622.3d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-281
        CDS_position: ?-277
        Protein_position: ?-93
        Intron_number: 2/5
        Exon_number: 1-3/6
      ZK622.3d.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK622.3d.3:c.-3-64_277delinsATCTTGGGAACATCAA
        cDNA_position: ?-329
        CDS_position: ?-277
        Protein_position: ?-93
        Intron_number: 1-3/5
        Exon_number: 2-4/6
      ZK622.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK622.3a.1:c.42-63_322delinsATCTTGGGAACATCAA
        cDNA_position: ?-330
        CDS_position: ?-322
        Protein_position: ?-108
        Intron_number: 2-3/6
        Exon_number: 3-4/7
      ZK622.3d.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK622.3d.2:c.-4-63_277delinsATCTTGGGAACATCAA
        cDNA_position: ?-328
        CDS_position: ?-277
        Protein_position: ?-93
        Intron_number: 1-3/5
        Exon_number: 2-4/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 3101/3102-TTGATGTTCCCAAGAT-3545/3546 (444 bp deletion + 16 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele