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WormBase Tree Display for Variation: WBVar02125574

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Name Class

WBVar02125574NamePublic_nametm6714
Other_nameY54E2A.9.1:c.32_433del
CE20308:p.Leu11_Gly145delinsArg
HGVSgCHROMOSOME_II:g.14785563_14785964del
Sequence_detailsSMapS_parentSequenceY54E2A
Flanking_sequencesaccaaagctttaaccatcaaataattttacgcgaagccaagatggcaattgaacggagca
Mapping_targetY54E2A
Source_location7CHROMOSOME_II1478556214785965Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm6714_external
tm6714_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq6714
NBP_allele
StatusLive
AffectsGeneWBGene00013194
TranscriptY54E2A.9.1VEP_consequenceinframe_deletion,splice_region_variant
VEP_impactMODERATE
HGVScY54E2A.9.1:c.32_433del
HGVSpCE20308:p.Leu11_Gly145delinsArg
cDNA_position43-444
CDS_position32-433
Protein_position11-145
Exon_number2/4
Codon_changecTCCTCTTGGCGATCAGTGCTGAGCCCACAATCCTCCAGTCGCCACGTGTCACCAATTGGGGGGAATGGACTGGAAAGAGATGTCCTTCTGGCCAATTTGTTCGTGGACTCAGGGTCAAGTACGACAATGCCCAATATTTCAGCGATCAGACCGGTATCAATGCAATTGAGCTTGTTTGCCATAATCGCTCTGATCAGGTTGACACATACCTCAAGAGTGGTGAAGGCCCACATGGAGACTGGCTAGAACTCCAGTACTGCCCTGAAGGAGAATATGGTGTTGGTTTTGCGATTCGATCAGCAGGGCCTCTACGCGGTAGATTTGATGATTACGGTGTAGTAAATTTTCAACTATATTGTGGTCAACCGAACGGAAAAAGAAACTCGTGGCACCGACTTACAGga/cga
Amino_acid_changeLLLAISAEPTILQSPRVTNWGEWTGKRCPSGQFVRGLRVKYDNAQYFSDQTGINAIELVCHNRSDQVDTYLKSGEGPHGDWLELQYCPEGEYGVGFAIRSAGPLRGRFDDYGVVNFQLYCGQPNGKRNSWHRLTG/R
IsolationMutagenTMP/UV
GeneticsMapII
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal or sterile by the National BioResource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal or sterile by the National BioResource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
Remark47471/47472-47873/47874 (402 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele