WormBase Tree Display for Variation: WBVar02141102

WBVar02141102 Name: Public_name: tm6807
    Other_name: C55A6.7.1:c.442_*26del
    HGVSg: CHROMOSOME_V:g.11519458_11519845del
  Sequence_details: SMap: S_parent: Sequence: C55A6
    Flanking_sequences: tgaaagtaaatcagtcgtacaacaatcatt gattgcaccacgagaaacggaaagtgtatc
    Mapping_target: C55A6
    Source_location: 7 CHROMOSOME_V 11519457 11519846 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm6807_external
      tm6807_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6807
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00008336
    Transcript: C55A6.7.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C55A6.7.1:c.442_*26del
        cDNA_position: 539-879
        CDS_position: 442-?
        Protein_position: 148-?
        Intron_number: 3/4
        Exon_number: 3-5/5
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype: WBPhenotype:0000061 Paper_evidence: WBPaper00059839
        Curator_confirmed: WBPerson42723
        Remark: extended lifespan upon exposure to S. maltophilia K279a Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Variation_effect: Null: Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Phenotype_assay: Control_strain: WBStrain00000001 Paper_evidence: WBPaper00059839
              Curator_confirmed: WBPerson42723
    Phenotype_not_observed: WBPhenotype:0000039 Paper_evidence: WBPaper00059839
        Curator_confirmed: WBPerson42723
        Remark: NO lifespan phenotype upon exposure to E. coli OP50 Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Variation_effect: Null: Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Phenotype_assay: Control_strain: WBStrain00000001 Paper_evidence: WBPaper00059839
              Curator_confirmed: WBPerson42723
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Reference: WBPaper00059839
  Remark: 22065/22066-22453/22454 (388 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele