WormBase Tree Display for Variation: WBVar02143882
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| WBVar02143882 | Name | Public_name | tm6402 | |||||
|---|---|---|---|---|---|---|---|---|
| Other_name | F42H10.5a.2:c.1467_2661delinsAGTTTTTTGAGAATTATGAATTTTCCCAGGCGCGACAAATTGTCCAAAAAATACGGTACCAGGTCTCGCAAGGACAATTTTTTTGTTAAATTCAAAAAGGTGTGCGCCTTTAAAAGGTACTGTAATTTCAAACCCTCGTTTACGCGGAATTTTCTTAAATTTCCAATTTTTCTCTAGATTTGTTTAAATTGTGTTGTTATAGTTATATTCGATTTTTTATGATGTATTTTTTTATAGAAAAACTATGAAAAATTACACTGCAACCATAATTAAGAACTACAGTACTCTTTAAAGGCGCACACCTTTTTGCATTTAACAAAAATTTGTCGTCACAAGACCAGGCACCGTATTTCTGGTGCAAAAATCGCAAAATTTCACGCCTGGGTTATAACTGTTCGAAAAACCCATCTGTAAAAAGTTTTTATGCTGAAAATTGTGATCCCTTTTCAAATTTGTTAATTTCTTTTAGATACCGGCTCGAAAGCCTATCTGGAATACGCAGAGCTTCCAAATCGCGTGCTCGATTTTCAACATACCGTAACCCCAGAAGACCAACAAGGAAAGGGGAGTCGCCAAAATTCTCGTCAAGGAAGGACTCAAATACGCCGCCGACAACAAGTATCTCGTCCAGCCAACCTGCTGGTACGTAGCAAAATATCTTGATGGAAGTAGTGCAACTGAAGAGGAGAAGCAACTCGATATTCGCCACAAGCTGTGAATATTCGAATTTTAAATGTTTCGATTGTGAAGATTTGTGCCTGTATTGTAAGGGTTGTAATTAATAAAGTTATTTTGAGAACAAGTTTTTTAATAAAACA | |||||||
| CE51710:p.Leu398ValfsTer3 | ||||||||
| F42H10.5b.1:c.1191_2385delinsAGTTTTTTGAGAATTATGAATTTTCCCAGGCGCGACAAATTGTCCAAAAAATACGGTACCAGGTCTCGCAAGGACAATTTTTTTGTTAAATTCAAAAAGGTGTGCGCCTTTAAAAGGTACTGTAATTTCAAACCCTCGTTTACGCGGAATTTTCTTAAATTTCCAATTTTTCTCTAGATTTGTTTAAATTGTGTTGTTATAGTTATATTCGATTTTTTATGATGTATTTTTTTATAGAAAAACTATGAAAAATTACACTGCAACCATAATTAAGAACTACAGTACTCTTTAAAGGCGCACACCTTTTTGCATTTAACAAAAATTTGTCGTCACAAGACCAGGCACCGTATTTCTGGTGCAAAAATCGCAAAATTTCACGCCTGGGTTATAACTGTTCGAAAAACCCATCTGTAAAAAGTTTTTATGCTGAAAATTGTGATCCCTTTTCAAATTTGTTAATTTCTTTTAGATACCGGCTCGAAAGCCTATCTGGAATACGCAGAGCTTCCAAATCGCGTGCTCGATTTTCAACATACCGTAACCCCAGAAGACCAACAAGGAAAGGGGAGTCGCCAAAATTCTCGTCAAGGAAGGACTCAAATACGCCGCCGACAACAAGTATCTCGTCCAGCCAACCTGCTGGTACGTAGCAAAATATCTTGATGGAAGTAGTGCAACTGAAGAGGAGAAGCAACTCGATATTCGCCACAAGCTGTGAATATTCGAATTTTAAATGTTTCGATTGTGAAGATTTGTGCCTGTATTGTAAGGGTTGTAATTAATAAAGTTATTTTGAGAACAAGTTTTTTAATAAAACA | ||||||||
| F42H10.5a.1:c.1467_2661delinsAGTTTTTTGAGAATTATGAATTTTCCCAGGCGCGACAAATTGTCCAAAAAATACGGTACCAGGTCTCGCAAGGACAATTTTTTTGTTAAATTCAAAAAGGTGTGCGCCTTTAAAAGGTACTGTAATTTCAAACCCTCGTTTACGCGGAATTTTCTTAAATTTCCAATTTTTCTCTAGATTTGTTTAAATTGTGTTGTTATAGTTATATTCGATTTTTTATGATGTATTTTTTTATAGAAAAACTATGAAAAATTACACTGCAACCATAATTAAGAACTACAGTACTCTTTAAAGGCGCACACCTTTTTGCATTTAACAAAAATTTGTCGTCACAAGACCAGGCACCGTATTTCTGGTGCAAAAATCGCAAAATTTCACGCCTGGGTTATAACTGTTCGAAAAACCCATCTGTAAAAAGTTTTTATGCTGAAAATTGTGATCCCTTTTCAAATTTGTTAATTTCTTTTAGATACCGGCTCGAAAGCCTATCTGGAATACGCAGAGCTTCCAAATCGCGTGCTCGATTTTCAACATACCGTAACCCCAGAAGACCAACAAGGAAAGGGGAGTCGCCAAAATTCTCGTCAAGGAAGGACTCAAATACGCCGCCGACAACAAGTATCTCGTCCAGCCAACCTGCTGGTACGTAGCAAAATATCTTGATGGAAGTAGTGCAACTGAAGAGGAGAAGCAACTCGATATTCGCCACAAGCTGTGAATATTCGAATTTTAAATGTTTCGATTGTGAAGATTTGTGCCTGTATTGTAAGGGTTGTAATTAATAAAGTTATTTTGAGAACAAGTTTTTTAATAAAACA | ||||||||
| CE44927:p.Leu490ValfsTer3 | ||||||||
| F42H10.5a.3:c.1467_2661delinsAGTTTTTTGAGAATTATGAATTTTCCCAGGCGCGACAAATTGTCCAAAAAATACGGTACCAGGTCTCGCAAGGACAATTTTTTTGTTAAATTCAAAAAGGTGTGCGCCTTTAAAAGGTACTGTAATTTCAAACCCTCGTTTACGCGGAATTTTCTTAAATTTCCAATTTTTCTCTAGATTTGTTTAAATTGTGTTGTTATAGTTATATTCGATTTTTTATGATGTATTTTTTTATAGAAAAACTATGAAAAATTACACTGCAACCATAATTAAGAACTACAGTACTCTTTAAAGGCGCACACCTTTTTGCATTTAACAAAAATTTGTCGTCACAAGACCAGGCACCGTATTTCTGGTGCAAAAATCGCAAAATTTCACGCCTGGGTTATAACTGTTCGAAAAACCCATCTGTAAAAAGTTTTTATGCTGAAAATTGTGATCCCTTTTCAAATTTGTTAATTTCTTTTAGATACCGGCTCGAAAGCCTATCTGGAATACGCAGAGCTTCCAAATCGCGTGCTCGATTTTCAACATACCGTAACCCCAGAAGACCAACAAGGAAAGGGGAGTCGCCAAAATTCTCGTCAAGGAAGGACTCAAATACGCCGCCGACAACAAGTATCTCGTCCAGCCAACCTGCTGGTACGTAGCAAAATATCTTGATGGAAGTAGTGCAACTGAAGAGGAGAAGCAACTCGATATTCGCCACAAGCTGTGAATATTCGAATTTTAAATGTTTCGATTGTGAAGATTTGTGCCTGTATTGTAAGGGTTGTAATTAATAAAGTTATTTTGAGAACAAGTTTTTTAATAAAACA | ||||||||
| HGVSg | CHROMOSOME_III:g.8475767_8477583delinsAGTTTTTTGAGAATTATGAATTTTCCCAGGCGCGACAAATTGTCCAAAAAATACGGTACCAGGTCTCGCAAGGACAATTTTTTTGTTAAATTCAAAAAGGTGTGCGCCTTTAAAAGGTACTGTAATTTCAAACCCTCGTTTACGCGGAATTTTCTTAAATTTCCAATTTTTCTCTAGATTTGTTTAAATTGTGTTGTTATAGTTATATTCGATTTTTTATGATGTATTTTTTTATAGAAAAACTATGAAAAATTACACTGCAACCATAATTAAGAACTACAGTACTCTTTAAAGGCGCACACCTTTTTGCATTTAACAAAAATTTGTCGTCACAAGACCAGGCACCGTATTTCTGGTGCAAAAATCGCAAAATTTCACGCCTGGGTTATAACTGTTCGAAAAACCCATCTGTAAAAAGTTTTTATGCTGAAAATTGTGATCCCTTTTCAAATTTGTTAATTTCTTTTAGATACCGGCTCGAAAGCCTATCTGGAATACGCAGAGCTTCCAAATCGCGTGCTCGATTTTCAACATACCGTAACCCCAGAAGACCAACAAGGAAAGGGGAGTCGCCAAAATTCTCGTCAAGGAAGGACTCAAATACGCCGCCGACAACAAGTATCTCGTCCAGCCAACCTGCTGGTACGTAGCAAAATATCTTGATGGAAGTAGTGCAACTGAAGAGGAGAAGCAACTCGATATTCGCCACAAGCTGTGAATATTCGAATTTTAAATGTTTCGATTGTGAAGATTTGTGCCTGTATTGTAAGGGTTGTAATTAATAAAGTTATTTTGAGAACAAGTTTTTTAATAAAACA | |||||||
| Sequence_details | SMap | S_parent | Sequence | F42H10 | ||||
| Flanking_sequences | actatctgcaagcaagaaactcaaccttct | ttatccattccaatcttcactcttaccgct | ||||||
| Mapping_target | F42H10 | |||||||
| Source_location | 7 | CHROMOSOME_III | 8475766 | 8477584 | Inferred_automatically | National_Bioresource_Project | ||
| Type_of_mutation | Insertion | agttttttgagaattatgaattttcccaggcgcgacaaattgtccaaaaaatacggtaccaggtctcgcaaggacaatttttttgttaaattcaaaaaggtgtgcgcctttaaaaggtactgtaatttcaaaccctcgtttacgcggaattttcttaaatttccaatttttctctagatttgtttaaattgtgttgttatagttatattcgattttttatgatgtatttttttatagaaaaactatgaaaaattacactgcaaccataattaagaactacagtactctttaaaggcgcacacctttttgcatttaacaaaaatttgtcgtcacaagaccaggcaccgtatttctggtgcaaaaatcgcaaaatttcacgcctgggttataactgttcgaaaaacccatctgtaaaaagtttttatgctgaaaattgtgatcccttttcaaatttgttaatttcttttagataccggctcgaaagcctatctggaatacgcagagcttccaaatcgcgtgctcgattttcaacataccgtaaccccagaagaccaacaaggaaaggggagtcgccaaaattctcgtcaaggaaggactcaaatacgccgccgacaacaagtatctcgtccagccaacctgctggtacgtagcaaaatatcttgatggaagtagtgcaactgaagaggagaagcaactcgatattcgccacaagctgtgaatattcgaattttaaatgtttcgattgtgaagatttgtgcctgtattgtaagggttgtaattaataaagttattttgagaacaagttttttaataaaaca | ||||||
| Deletion | ||||||||
| PCR_product | tm6402_external | |||||||
| tm6402_internal | ||||||||
| SeqStatus | Sequenced | |||||||
| Variation_type | Allele | |||||||
| Origin | Species | Caenorhabditis elegans | ||||||
| Laboratory | FX | |||||||
| Author | Mitani S | |||||||
| DB_info | Database | National_Bioresource_Project | seq | 6402 | ||||
| NBP_allele | ||||||||
| Status | Live | |||||||
| Affects | Gene | WBGene00018369 | ||||||
| Transcript | F42H10.5a.3 (11) | |||||||
| F42H10.5b.1 (11) | ||||||||
| F42H10.5a.1 (11) | ||||||||
| F42H10.5a.2 (11) | ||||||||
| Isolation | Mutagen | TMP/UV | ||||||
| Genetics | Map | III | ||||||
| Description | Phenotype_not_observed | WBPhenotype:0000062 | Person_evidence | WBPerson7743 | ||||
| Curator_confirmed | WBPerson712 | |||||||
| Remark | Classified as homozygous viable by the National Bioresource Project of Japan. | Person_evidence | WBPerson7743 | |||||
| Curator_confirmed | WBPerson712 | |||||||
| Laboratory_evidence | FX | |||||||
| Remark | 2826/2827-agttttttgagaattatgaattttcccaggcgcgacaaattgtccaaaaaatacggtaccaggtctcgcaaggacaatttttttgttaaattcaaaaaggtgtgcgcctttaaaaggtactgtaatttcaaaccctcgtttacgcggaattttcttaaatttccaatttttctctagatttgtttaaattgtgttgttatagttatattcgattttttatgatgtatttttttatagaaaaactatgaaaaattacactgcaaccataattaagaactacagtactctttaaaggcgcacacctttttgcatttaacaaaaatttgtcgtcacaagaccaggcaccgtatttctggtgcaaaaatcgcaaaatttcacgcctgggttataactgttcgaaaaacccatctgtaaaaagtttttatgctgaaaattgtgatcccttttcaaatttgttaatttcttttagataccggctcgaaagcctatctggaatacgcagagcttccaaatcgcgtgctcgattttcaacataccgtaaccccagaagaccaacaaggaaaggggagtcgccaaaattctcgtcaaggaaggactcaaatacgccgccgacaacaagtatctcgtccagccaacctgctggtacgtagcaaaatatcttgatggaagtagtgcaactgaagaggagaagcaactcgatattcgccacaagctgtgaatattcgaattttaaatgtttcgattgtgaagatttgtgcctgtattgtaagggttgtaattaataaagttattttgagaacaagttttttaataaaaca-4643/4644 (1817 bp deletion + 808 bp insertion) | |||||||
| This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
| Method | NBP_knockout_allele |
