WormBase Tree Display for Variation: WBVar02143902

WBVar02143902 Name: Public_name: tm5268
    HGVSg: CHROMOSOME_III:g.5925916_5926646del
  Sequence_details: SMap: S_parent: Sequence: C28H8
    Flanking_sequences: tgcgaaacaagtaaattagattgtccgaga tcaacgaagattccaatttttccactggcg
    Mapping_target: C28H8
    Source_location: 7 CHROMOSOME_III 5925915 5926647 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5268_external
      tm5268_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5268
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00016192
    Transcript: C28H8.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-292
        CDS_position: ?-292
        Protein_position: ?-98
        Intron_number: 1-2/3
        Exon_number: 1-3/4
    Interactor: WBInteraction000524945
      WBInteraction000524946
      WBInteraction000524947
      WBInteraction000524956
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Paper_evidence: WBPaper00046304
        Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
          WBPerson426
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0001567 Paper_evidence: WBPaper00046304
        Curator_confirmed: WBPerson426
      WBPhenotype:0001923 Paper_evidence: WBPaper00046304
        Curator_confirmed: WBPerson426
  Reference: WBPaper00046304
  Remark: 43217/43218-43948/43949 (731 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele