WormBase Tree Display for Variation: WBVar02143907

WBVar02143907 Name: Public_name: tm5568
    Other_name: B0564.1a.2:c.543+9_*64del
      B0564.1b.2:c.*548_*997del
      B0564.1a.1:c.543+9_*64del
      B0564.1a.3:c.543+9_*64del
    HGVSg: CHROMOSOME_IV:g.13100134_13100583del
  Sequence_details: SMap: S_parent: Sequence: B0564
    Flanking_sequences: tgatctccttcccagagttactgtatgttt ttgcagtcgataaatcagttttttcaaatt
    Mapping_target: B0564
    Source_location: 7 CHROMOSOME_IV 13100133 13100584 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5568_external
      tm5568_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5568
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00007201
      WBGene00044083
    Transcript: B0564.1b.1 VEP_consequence: splice_acceptor_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 6/6
        Exon_number: 7/7
      B0564.1a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0564.1a.1:c.543+9_*64del
        cDNA_position: ?-1157
        Intron_number: 6/7
        Exon_number: 7-8/8
      B0564.1a.3 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0564.1a.3:c.543+9_*64del
        cDNA_position: ?-1111
        Intron_number: 5/6
        Exon_number: 6-7/7
      B0564.1b.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: B0564.1b.2:c.*548_*997del
        cDNA_position: 932-1381
        Exon_number: 7/7
      B0564.1a.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0564.1a.2:c.543+9_*64del
        cDNA_position: ?-1213
        Intron_number: 5/6
        Exon_number: 6-7/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 1952/1953-2402/2403 (450 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele