WormBase Tree Display for Variation: WBVar02143908

WBVar02143908 Name: Public_name: tm5693
    HGVSg: CHROMOSOME_III:g.859572_860301del
  Sequence_details: SMap: S_parent: Sequence: Y6D11A
    Flanking_sequences: cagacaaacaacaattgtgatatccccatg atacagccttcagaccgctttgtgtcaaat
    Mapping_target: Y6D11A
    Source_location: 7 CHROMOSOME_III 859571 860302 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5693_external
      tm5693_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5693
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000202
      WBGene00019334
    Transcript: K02F3.12a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 5/6
        Exon_number: 6-7/7
      K02F3.12b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 5/5
        Exon_number: 6/6
      Y6D11A.1.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-104
        CDS_position: ?-100
        Protein_position: ?-34
        Exon_number: 1-2/4
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 1185/1186-1915/1916 (730 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele