WormBase Tree Display for Variation: WBVar02146248

WBVar02146248 Name: Public_name: tm8277
    Other_name: F16H9.1c.1:c.26+1116_27-689del
      F16H9.1a.1:c.47+1407_48-689del
      F16H9.1b.1:c.84-2103_84-689del
      F16H9.2b.1:c.35-17647_35-16233del
      F16H9.2a.1:c.-23-17647_-23-16233del
    HGVSg: CHROMOSOME_X:g.12723536_12724950del
  Sequence_details: SMap: S_parent: Sequence: F16H9
    Flanking_sequences: cagccattggtgcccggatctttggtatga cttgtttgcctctctttagaaaaagaacct
    Mapping_target: F16H9
    Source_location: 7 CHROMOSOME_X 12723535 12724951 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm8277_external
      tm8277_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 8277
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00219896
      WBGene00008901
      WBGene00004345
    Transcript: F16H9.1a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F16H9.1a.1:c.47+1407_48-689del
        Intron_number: 2/6
      F16H9.2b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F16H9.2b.1:c.35-17647_35-16233del
        Intron_number: 1/3
      F16H9.1c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F16H9.1c.1:c.26+1116_27-689del
        Intron_number: 2/6
      F16H9.2a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F16H9.2a.1:c.-23-17647_-23-16233del
        Intron_number: 1/4
      F16H9.1b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F16H9.1b.1:c.84-2103_84-689del
        Intron_number: 2/6
      F16H9.5 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 18090/18091-19505/19506 (1415 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele