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WormBase Tree Display for Variation: WBVar02147748

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Name Class

WBVar02147748NamePublic_nametm2608
Other_nameC56C10.12.1:c.4789+540_4790-1106del
CE30636:p.Trp272ValfsTer5
C56C10.1.1:c.813_1489del
HGVSgCHROMOSOME_II:g.6602236_6602912del
Sequence_detailsSMapS_parentSequenceC56C10
Flanking_sequencesacaagttcaaactggcccattggattttgatgtcaaatccttctgatatgagttatgttt
Mapping_targetC56C10
Source_location7CHROMOSOME_II66022356602913Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm2608_external
tm2608_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq2608
NBP_allele
StatusLive
AffectsGeneWBGene00016968
WBGene00016960
TranscriptC56C10.12.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC56C10.12.1:c.4789+540_4790-1106del
Intron_number17/24
C56C10.1.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScC56C10.1.1:c.813_1489del
HGVSpCE30636:p.Trp272ValfsTer5
cDNA_position921-1597
CDS_position813-1489
Protein_position271-497
Exon_number4/7
Codon_changegaTTGGATCGAGATTAATCCGGAAGAAGACAAGGAGGCACATCAACAAAATAGAGGAGATACAGTGAAATTGGATAATTGTGAGGACATTTTTGCATCGATTCGAAACAAGCACGTCACAGCTGCCCTGGAGTTTTTACATTCCAAAGCGAAATCGATACAGAAAAGTATCGAAAAATCATCGATGATTGATGATGTTGCGGATTATAGAAACTTTGTTGAAAAAGACCTGAGAGCGCTCAAAAAGGATCACAAGCATTGTGAATTGCACATTAATGCATGCGAAATGATGATGAATAAAGTTAAAATGGAAGATTATCGAACCATGTTCAAATTAGAACACGAAATGCTACTCGGAACCGTAACCCATGAAGAGTATTTTGATTTTGTTTTTGAAAGAGTTCCGATGAGATCCTGTCGTGATGTGGTTCTATCGATGATGTCACTTGCATCTCTCAAATTAGACGGAGTTCCTGATGATACGTACAACGAATTCGTGGAAATGTATCTACAAAAGTACGGATACGAGCATATGTTCGAACTTCAGAATCTTCGAAATTCCCGTGTTATTTACGCCCGTCGACATATCGCACACGATCGGACTATTTCGGAACGTGCCAGGACATGGGAAACATTGGCAAGAAAGTTCAGAATCGTTAAGGGAAACGAGCCAATGGATAtg/gatg
Amino_acid_changeDWIEINPEEDKEAHQQNRGDTVKLDNCEDIFASIRNKHVTAALEFLHSKAKSIQKSIEKSSMIDDVADYRNFVEKDLRALKKDHKHCELHINACEMMMNKVKMEDYRTMFKLEHEMLLGTVTHEEYFDFVFERVPMRSCRDVVLSMMSLASLKLDGVPDDTYNEFVEMYLQKYGYEHMFELQNLRNSRVIYARRHIAHDRTISERARTWETLARKFRIVKGNEPMDM/DX
IsolationMutagenTMP/UV
GeneticsMapII
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National BioResource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National BioResource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Remark27949/27950-28626/28627 (677 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele