WormBase Tree Display for Variation: WBVar02147895

WBVar02147895 Name: Public_name: tm10078
    Other_name: CE49673:p.Ile109ArgfsTer21
      Y39G10AR.13a.1:c.476_585del
      Y39G10AR.13b.1:c.323_432del
      CE26991:p.Ile160ArgfsTer21
    HGVSg: CHROMOSOME_I:g.2306105_2306214del
  Sequence_details: SMap: S_parent: Sequence: Y39G10AR
    Flanking_sequences: aaccacagctgcacggccgggagttcctgc ttccttcggtcttctttttggatatgctca
    Mapping_target: Y39G10AR
    Source_location: 7 CHROMOSOME_I 2306104 2306215 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm10078_external
      tm10078_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 10078
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002047
    Transcript: Y39G10AR.13a.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: Y39G10AR.13a.1:c.476_585del
        HGVSp: CE26991:p.Ile160ArgfsTer21
        cDNA_position: 480-589
        CDS_position: 476-585
        Protein_position: 159-195
        Exon_number: 4/7
        Codon_change: aGCATCTCACGAAATGCAGCGTACAGTGGCACTCCTCGCAGAAATCCACCGCGTGAGGCTCACAATCAAGCTACTCCGCGCAACATTTTCTCGTCAACACCTGGACGTATG/a
        Amino_acid_change: SISRNAAYSGTPRRNPPREAHNQATPRNIFSSTPGRM/X
      Y39G10AR.13b.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: Y39G10AR.13b.1:c.323_432del
        HGVSp: CE49673:p.Ile109ArgfsTer21
        cDNA_position: 323-432
        CDS_position: 323-432
        Protein_position: 108-144
        Exon_number: 2/4
        Codon_change: aGCATCTCACGAAATGCAGCGTACAGTGGCACTCCTCGCAGAAATCCACCGCGTGAGGCTCACAATCAAGCTACTCCGCGCAACATTTTCTCGTCAACACCTGGACGTATG/a
        Amino_acid_change: SISRNAAYSGTPRRNPPREAHNQATPRNIFSSTPGRM/X
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 24376/24377-24486/24487 (110 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele