WormBase Tree Display for Variation: WBVar02148009

WBVar02148009 Name: Public_name: tm10221
    HGVSg: CHROMOSOME_X:g.16671602_16680451del
  Sequence_details: SMap: S_parent: Sequence: CHROMOSOME_X
    Flanking_sequences: tgcctcgagctttgctccacttcgataact tcaataaatagatgaataatgctctgttca
    Mapping_target: CHROMOSOME_X
    Source_location: 7 CHROMOSOME_X 16671601 16680452 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm10221_external
      tm10221_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 10221
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00017727
      WBGene00017726
      WBGene00018374
    Transcript: F43B10.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-158
        CDS_position: ?-158
        Protein_position: ?-53
        Intron_number: 1-2/15
        Exon_number: 1-3/16
      F22H10.3.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F43B10.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-824
        CDS_position: ?-824
        Protein_position: ?-275
        Intron_number: 1-7/21
        Exon_number: 1-8/22
      F22H10.2.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: [F43B10]31132/31133-[F22H10]4714/4715 (8850 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
    Old Mapping_target F43B10 updated based on the VEP analysis pipeline to CHROMOSOME_X.
  Method: NBP_knockout_allele