WormBase Tree Display for Variation: WBVar02148010

WBVar02148010 Name: Public_name: tm10222
    HGVSg: CHROMOSOME_III:g.10089047_10098726del
  Sequence_details: SMap: S_parent: Sequence: T16H12
    Flanking_sequences: ttaaatctgacgtaccctcgtgtcacttca ttctgacatgtcaggaagagcctagaaaaa
    Mapping_target: T16H12
    Source_location: 7 CHROMOSOME_III 10089046 10098727 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm10222_external
      tm10222_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 10222
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002186
      WBGene00011815
      WBGene00011814
    Transcript: T16H12.6.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1639-?
        CDS_position: 1639-?
        Protein_position: 547-?
        Exon_number: 12-13/13
      T16H12.5b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-6/7
        Exon_number: 1-8/8
      T16H12.5a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-7/8
        Exon_number: 1-9/9
      T16H12.4.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-992
        CDS_position: ?-986
        Protein_position: ?-329
        Intron_number: 2-9/11
        Exon_number: 1-10/12
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 12504/12505-22184/22185 (9680 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele