WormBase Tree Display for Variation: WBVar02148058

WBVar02148058 Name: Public_name: tm10280
    HGVSg: CHROMOSOME_I:g.15062241_15065343delinsTTTT
  Sequence_details: SMap: S_parent: Sequence: F31C3
    Flanking_sequences: caaaaaaaaaaacaatgtgcttgctttagaaaaacttagaacattttttttttttcatcccaaaaatcagacccccttgctgcatagtacggctgttgtgatgggtagtgccaccgagtgggcaaaccacattcagaggctggtgaagggggtagacagcggccggagtgtgctggtggagagggcaaaccacattgacatgctgctgagaggggcgagatcgaatgataggctggtgagagggtaggcagcagccgcagtgctggtggagagggggacacaccaccaaagtctcaaaatgatagaaaattttgtgcaagcggccgaggtctccagagagacggctgagaaaaacggtgtctcgaggaagggggtcggtgtggtggggggtagtgcgcgcgttgtctgccgtctctcaaattgcacactgccggctttccgtggtttttataatactccctccccgcacactcctatatgtgtcaggggggtgacagttggtctgagacgtgatgtctcagggggctgtgttggtgatggtagtgtgtgtctcgcggcgcatagtactagtgccggcactggcaggctgtgtttacacccgaatgattctagcaatggtgtagtgctcgcggtgcgagttctttatatcattgcgccgatccatagatattgctgatgattcgcgtcgaggcgcttgagtctgaagctttggaagtttcggttgttgcatctctacttttgagatactaatgatgttgcggtattggtcttgttgtcgtgggacttgtttacgagaataaacccctgtatgagtgtcccatctcacgattagacattcttaggaaaacttctcgctagactatatgtctgcgtaatacctgattgattctgtcagcgcgatatgctcaagtaaaagattaagccatgcatgctttgattcatcaatgaaattgcgtacggctcattagagcagatatcaccttatccgggatcctcatatggataactgcggaaatactggagctaatacat ctatgctacgccgacggcgttggctgctcg
    Mapping_target: F31C3
    Source_location: 7 CHROMOSOME_I 15062240 15065344 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TTTT
      Deletion
    PCR_product: tm10280_external
      tm10280_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 10280
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00198814
      WBGene00004622
      WBGene00004567
      WBGene00004512
    Transcript: F31C3.15 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F31C3.9 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-506
        Exon_number: 1/1
      F31C3.7 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        cDNA_position: 159-?
        Exon_number: 1/1
      F31C3.11 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 23983/23984-TTTT-27086/27087 (3103 bp deletion + 4 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele