WormBase Tree Display for Variation: WBVar02148309

WBVar02148309 Name: Public_name: tm10568
    Other_name: Y54G2A.16c.1:c.24_111del
      CE25464:p.Leu9CysfsTer9
      Y54G2A.16b.1:c.375_462del
      CE34412:p.Leu50CysfsTer9
      Y54G2A.16a.1:c.147_234del
      CE48503:p.Leu126CysfsTer9
    HGVSg: CHROMOSOME_IV:g.2856062_2856149del
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: acttacacaggagagcataaatgggagcag aaagattgagcgtctgacgtcattgctgtt
    Mapping_target: Y54G2A
    Source_location: 7 CHROMOSOME_IV 2856061 2856150 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm10568_external
      tm10568_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 10568
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00021881
    Transcript: Y54G2A.16a.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: Y54G2A.16a.1:c.147_234del
        HGVSp: CE34412:p.Leu50CysfsTer9
        cDNA_position: 147-234
        CDS_position: 147-234
        Protein_position: 49-78
        Exon_number: 2/5
        Codon_change: ttTCTCACTACTCCAATCGTTCTCTCCTTACTACAATTTGCCACATCGATGATCATGATAGTAGCGGTGCTCACAAGCTTCCATTGGCTC/tt
        Amino_acid_change: FLTTPIVLSLLQFATSMIMIVAVLTSFHWL/X
      Y54G2A.16c.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: Y54G2A.16c.1:c.24_111del
        HGVSp: CE25464:p.Leu9CysfsTer9
        cDNA_position: 24-111
        CDS_position: 24-111
        Protein_position: 8-37
        Exon_number: 1/3
        Codon_change: ttTCTCACTACTCCAATCGTTCTCTCCTTACTACAATTTGCCACATCGATGATCATGATAGTAGCGGTGCTCACAAGCTTCCATTGGCTC/tt
        Amino_acid_change: FLTTPIVLSLLQFATSMIMIVAVLTSFHWL/X
      Y54G2A.16b.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: Y54G2A.16b.1:c.375_462del
        HGVSp: CE48503:p.Leu126CysfsTer9
        cDNA_position: 375-462
        CDS_position: 375-462
        Protein_position: 125-154
        Exon_number: 3/6
        Codon_change: ttTCTCACTACTCCAATCGTTCTCTCCTTACTACAATTTGCCACATCGATGATCATGATAGTAGCGGTGCTCACAAGCTTCCATTGGCTC/tt
        Amino_acid_change: FLTTPIVLSLLQFATSMIMIVAVLTSFHWL/X
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 105840/105841-105928/105929 (88 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele