WormBase Tree Display for Variation: WBVar02148326

WBVar02148326 Name: Public_name: tm10585
    HGVSg: CHROMOSOME_IV:g.11412480_11418693del
  Sequence_details: SMap: S_parent: Sequence: F22B3
    Flanking_sequences: attcctcagcatctgcatggtagtatgcaa tttataaaaattatgtagatcaaacaaaat
    Mapping_target: F22B3
    Source_location: 7 CHROMOSOME_IV 11412479 11418694 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm10585_external
      tm10585_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 10585
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00009036
      WBGene00196972
      WBGene00045122
      WBGene00009038
      WBGene00009035
    Transcript: F22B3.5b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-4/4
        Exon_number: 1-5/5
      F22B3.4.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 1897-?
        CDS_position: 1869-?
        Protein_position: 623-?
        Intron_number: 4-5/6
        Exon_number: 4-7/7
      F22B3.13 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F22B3.4.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 2040-?
        CDS_position: 1869-?
        Protein_position: 623-?
        Intron_number: 5-6/7
        Exon_number: 5-8/8
      F22B3.10a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-7/7
        Exon_number: 1-8/8
      F22B3.7.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-8/8
        Exon_number: 3-9/9
      F22B3.5a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-5/5
        Exon_number: 1-6/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 7095/7096-13309/13310 (6214 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele