WormBase Tree Display for Variation: WBVar02151616

WBVar02151616 Name: Public_name: tm11276
    Other_name: Y54G2A.16b.1:c.73-953_475del
    HGVSg: CHROMOSOME_IV:g.2856049_2858224del
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: tttagaatgtaaaacttacacaggagagca aatagaagggagaagaacataaagactggt
    Mapping_target: Y54G2A
    Source_location: 7 CHROMOSOME_IV 2856048 2858225 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm11276_external
      tm11276_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 11276
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00021881
    Transcript: Y54G2A.16a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-247
        CDS_position: ?-247
        Protein_position: ?-83
        Intron_number: 1/4
        Exon_number: 1-2/5
      Y54G2A.16c.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-124
        CDS_position: ?-124
        Protein_position: ?-42
        Exon_number: 1/3
      Y54G2A.16b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y54G2A.16b.1:c.73-953_475del
        cDNA_position: ?-475
        CDS_position: ?-475
        Protein_position: ?-159
        Intron_number: 1-2/5
        Exon_number: 2-3/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Remark: 105827/105828-108003/108004 (2176 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele