WormBase Tree Display for Variation: WBVar02152827
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WBVar02152827 | Name | Public_name | rp4 | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence_details | SeqStatus | Pending_curation | |||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00047495 | ||||||||
Laboratory | RJP | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00001210 | |||||||
Possibly_affects | WBGene00001210 | Paper_evidence | WBPaper00059324 | ||||||
Remark | CGC_name egl-46 | ||||||||
Description | Phenotype | WBPhenotype:0000216 | Paper_evidence | WBPaper00059324 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | exhibits a loss of Pgcy-33::gfp expression; exhibits the same phenotype as the previously published rp13 deletion allele, which is an out-of-frame deletion that removes the zinc finger domains | Paper_evidence | WBPaper00059324 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0006825 | PATO:0000460 | Paper_evidence | WBPaper00059324 | ||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Genotype | RJP56 egl-46(rp4); rpIs3(Pgcy-33::gfp); vsIs33(Pdop-3::rfp) | Paper_evidence | WBPaper00059324 | |||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000961 | Paper_evidence | WBPaper00059324 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | exhibits a loss of Pgcy-33::gfp expression; exhibits the same phenotype as the previously published rp13 deletion allele, which is an out-of-frame deletion that removes the zinc finger domains | Paper_evidence | WBPaper00059324 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0006825 | PATO:0000460 | Paper_evidence | WBPaper00059324 | ||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Genotype | RJP56 egl-46(rp4); rpIs3(Pgcy-33::gfp); vsIs33(Pdop-3::rfp) | Paper_evidence | WBPaper00059324 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Reference | WBPaper00059324 | ||||||||
Remark | [2020-02-25T21:04:24.057Z WBPerson712] New Variation: WBPaper00059324 The new lesion we identified egl-46(rp4) (TGC>TAC) causes a single amino acid change in a highly conserved cysteine residue (C185Y) that lies in the first zinc finger domain of EGL-46, | Curator_confirmed | WBPerson712 | ||||||
Method | Allele |