WormBase Tree Display for Variation: WBVar02157773
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| WBVar02157773 | Name | Public_name | gkDf67 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_II:g.14300890_14310258del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y54G11A | |
| Flanking_sequences | CGAGTAGAAAAGGGACCGACTAGGCCACCT | AACGATGTCCTGCATTAGCATTGGACCACG | |||
| Mapping_target | CHROMOSOME_II | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037878 | ||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00305822 | |||
| WBGene00013220 | |||||
| WBGene00000830 | |||||
| WBGene00000831 | |||||
| WBGene00305820 | |||||
| Transcript | Y54G11A.22 | ||||
| Y54G11A.6.1 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Intron_number | 2-4/5 | ||||
| Exon_number | 1-6/6 | ||||
| Y54G11A.13a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 238-? | ||||
| CDS_position | 202-? | ||||
| Protein_position | 68-? | ||||
| Intron_number | 4-5/6 | ||||
| Exon_number | 4-7/7 | ||||
| Y54G11A.5.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 2-4/5 | ||||
| Exon_number | 1-4/6 | ||||
| Y54G11A.13b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 145-? | ||||
| CDS_position | 145-? | ||||
| Protein_position | 49-? | ||||
| Intron_number | 2-3/3 | ||||
| Exon_number | 2-4/4 | ||||
| Y54G11A.24 | |||||
| Isolation | Mutagen | CRISPR_Cas9 | |||
| Genetics | Interpolated_map_position | II | 22.9038 | ||
| Remark | Complete QC-PCR not done. | ||||
| Method | Deletion_allele |
