WormBase Schema for Model: Sequence
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?Sequence | DNA | UNIQUE | ?DNA | UNIQUE | Int | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | UNIQUE | Canonical_parent | UNIQUE | ?Sequence | XREF | Genomic_non_canonical | |||||||
Genomic_parent | UNIQUE | ?Sequence | XREF | Nongenomic | ||||||||||
AGP_parent | UNIQUE | ?Sequence | XREF | AGP_fragment | ||||||||||
S_child (15) | ||||||||||||||
Structure | From | Source | UNIQUE | ?Sequence | XREF | Subsequence | ||||||||
Source_exons | Int | UNIQUE | Int | |||||||||||
Subsequence | ?Sequence | XREF | Source | UNIQUE | Int | UNIQUE | Int | |||||||
Overlap_right | UNIQUE | ?Sequence | XREF | Overlap_left | UNIQUE | Int | ||||||||
Overlap_left | UNIQUE | ?Sequence | XREF | Overlap_right | ||||||||||
Gap_right | UNIQUE | Int | Text | |||||||||||
Clone_left_end | ?Clone | XREF | Clone_left_end | UNIQUE | Int | |||||||||
Clone_right_end | ?Clone | XREF | Clone_right_end | UNIQUE | Int | |||||||||
Flipped | ||||||||||||||
DB_info (7) | ||||||||||||||
Origin (13) | ||||||||||||||
Visible | Title | UNIQUE | ?Text | |||||||||||
Matching_CDS | ?CDS | XREF | Matching_cDNA | #Evidence | ||||||||||
Matching_transcript | ?Transcript | XREF | Matching_cDNA | #Evidence | ||||||||||
Matching_pseudogene | ?Pseudogene | XREF | Matching_cDNA | #Evidence | ||||||||||
Clone | ?Clone | XREF | Sequence | |||||||||||
Clone_end_seq_read | ?Clone | XREF | End_sequence | |||||||||||
GO_term | ?GO_term | XREF | Sequence | ?GO_code | #Evidence | |||||||||
Gene | ?Gene | XREF | Other_sequence | |||||||||||
Paired_read | ?Sequence | XREF | Paired_read | |||||||||||
Reference | ?Paper | XREF | Sequence | |||||||||||
Expr_pattern | ?Expr_pattern | XREF | Sequence | |||||||||||
Interaction | ?Interaction | |||||||||||||
RNAi | ?RNAi | XREF | Sequence | |||||||||||
Confidential_remark | ?Text | |||||||||||||
Remark | ?Text | #Evidence | ||||||||||||
Properties (12) | ||||||||||||||
Splices | Confirmed_intron | Int | Int | #Splice_confirmation | ||||||||||
Predicted_5 | ?Method | Int | Int | UNIQUE | Float | |||||||||
Predicted_3 | ?Method | Int | Int | UNIQUE | Float | |||||||||
Cluster_information | Contains_reads | ?Sequence | XREF | Contained_in_cluster | ||||||||||
Contained_in_cluster | ?Sequence | XREF | Contains_reads | |||||||||||
Map | ?Map | XREF | Sequence | #Map_position | ||||||||||
Interpolated_map_position | UNIQUE | ?Map | UNIQUE | Float | ||||||||||
Oligo | ?Oligo | XREF | In_sequence | Int | UNIQUE | Int | ?Method | |||||||
Defines_feature | ?Feature | XREF | Defined_by_sequence | #Evidence | ||||||||||
Assembly_tags | Text | Int | Int | Text | ||||||||||
Homol | DNA_homol | ?Sequence | XREF | DNA_homol | ?Method | Float | Int | UNIQUE | Int | Int | UNIQUE | Int | #Homol_info | |
Pep_homol | ?Protein | XREF | DNA_homol | ?Method | Float | Int | UNIQUE | Int | Int | UNIQUE | Int | #Homol_info | ||
Motif_homol | ?Motif | XREF | DNA_homol | ?Method | Float | Int | UNIQUE | Int | Int | UNIQUE | Int | #Homol_info | ||
Homol_homol | ?Homol_data | XREF | DNA_homol | ?Method | Float | Int | UNIQUE | Int | Int | UNIQUE | Int | #Homol_info | ||
Method | UNIQUE | ?Method |