| CBG06707 | SMap | S_parent | Sequence | cb25.fpc0156 |
|---|
| Structure | Source_exons | 1 | 28 |
| | | 81 | 693 |
| | | 741 | 1033 |
| | | 1430 | 1515 |
| | | 1796 | 2135 |
| | | 2185 | 2452 |
| | | 2507 | 2735 |
| DB_info | Database | UniProt | UniProtAcc | A8X2X0 |
| | | | UniProtId | A8X2X0_CAEBR |
| | | KEGG | KEGG_id | 4.1.1.32 |
| | | TrEMBL | UniProtAcc | A8X2X0 |
| | | UniProt_GCRP | UniProtAcc | A8X2X0 |
| | | TREEFAM | TREEFAM_ID | TF314402 |
| | Protein_id | cb25.fpc0156 | CAP26980 | 2 |
| | DB_remark | CBR-PCK-3 protein; contains similarity to Pfam domains PF00821 (Phosphoenolpyruvate carboxykinase C-terminal P-loop domain), PF17297 (Phosphoenolpyruvate carboxykinase N-terminal domain); contains similarity to Interpro domains IPR035077 (Phosphoenolpyruvate carboxykinase, C-terminal P-loop domain), IPR013035 (Phosphoenolpyruvate carboxykinase, C-terminal), IPR008210 (Phosphoenolpyruvate carboxykinase, N-terminal), IPR008209 (Phosphoenolpyruvate carboxykinase, GTP-utilising), IPR035078 (Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal) |
| Origin | From_laboratory | CB |
| | Species | Caenorhabditis briggsae |
| Properties | Coding | CDS |
| | | Prediction_status | Confirmed |
| Visible | Gene | WBGene00028947 |
| | Corresponding_transcript | CBG06707.1 |
| | Corresponding_protein | CBP01677 |
| | Corresponding_oligo_set | GPL8303_CB6_WBGene00028947_A |
| | | GPL8303_CB6_WBGene00028947_B |
| | | GPL14143_CBG06707_1424-1483_0.833_88_C |
| | | GPL14143_CBG06707_1589-1648_0.935_9_A |
| | | GPL14143_CBG06707_1706-1765_0.957_1_B |
| | Matching_cDNA | briggsae_GG3138|c2_g1_i1 | Inferred_automatically | transcript_builder.pl |
| | | briggsae_GG3138|c1_g1_i1 | Inferred_automatically | transcript_builder.pl |
| | Microarray_results | GPL8303_CB6_WBGene00028947_A |
| | | GPL8303_CB6_WBGene00028947_B |
| | | GPL14143_CBG06707_1424-1483_0.833_88_C |
| | | GPL14143_CBG06707_1589-1648_0.935_9_A |
| | | GPL14143_CBG06707_1706-1765_0.957_1_B |
| | RNASeq_FPKM | WBls:0000002 | 0.72332 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717 |
| | | | 0.853434 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351 |
| | | | 1.16957 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718 |
| | | | 2.04081 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749 |
| | | WBls:0000003 | 0.07669 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707 |
| | | | 0.115609 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706 |
| | | | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708 |
| | | WBls:0000004 | 0.050156 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655 |
| | | | 0.092386 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070 |
| | | | 0.106032 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656 |
| | | | 0.18646 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087 |
| | | | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069 |
| | | WBls:0000024 | 0.055106 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711 |
| | | | 0.085613 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748 |
| | | | 0.112024 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786 |
| | | | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710 |
| | | WBls:0000027 | 0.063026 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666 |
| | | | 0.203009 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088 |
| | | | 0.209535 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712 |
| | | | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079 |
| | | WBls:0000035 | 0.39489 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713 |
| | | WBls:0000038 | 0.082604 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714 |
| | | | 0.151105 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715 |
| | | | 3.23818 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081 |
| | | | 5.31552 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089 |
| | | WBls:0000041 | 0.013813 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954 |
| | | | 0.029441 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953 |
| | | | 0.030773 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955 |
| | | | 102.561 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956 |
| | | | 76.4256 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957 |
| | | | 87.2743 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958 |
| | | WBls:0000063 | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086 |
| | | | 16.2285 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120 |
| | | | 17.3854 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668 |
| | | | 18.2498 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667 |
| | | | 22.7544 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119 |
| | | | 7.98503 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716 |
| | Last_reviewed | 31 Aug 2016 10:21:22 | WBPerson4025 |
| | Remark | [gffnote] orthologous to H04M03.1 by best mutual match (eval=0) ; Ortholog H04M03.1 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP01677 ; Gene WBGene00028947 |
| | | [20080722 tb] Modified based on Jigsaw gene ContigchrV_random.briggsae.jigsaw.400 |
| | | [160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG3138|c1_g1_i1-chrV-1b.extended'. | Curator_confirmed | WBPerson4025 |
| Method | curated |
