WormBase Tree Display for CDS: CBG10925
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| CBG10925 | SMap | S_parent | Sequence | cb25.fpc2397 | |
|---|---|---|---|---|---|
| Structure | Source_exons (13) | ||||
| DB_info | Database | UniProt | UniProtAcc | A8XCA2 | |
| UniProtId | A8XCA2_CAEBR | ||||
| TrEMBL | UniProtAcc | A8XCA2 | |||
| UniProt_GCRP | UniProtAcc | A8XCA2 | |||
| Protein_id | cb25.fpc2397 | CAP30200 | 2 | ||
| DB_remark | CBR-UNC-6 protein; contains similarity to Pfam domains PF00053 (Laminin EGF domain), PF00055 (Laminin N-terminal (Domain VI)), PF01759 (UNC-6/NTR/C345C module); contains similarity to Interpro domains IPR008993 (Tissue inhibitor of metalloproteinases-like, OB-fold), IPR008211 (Laminin, N-terminal), IPR002049 (Laminin-type EGF domain), IPR018933 (Netrin module, non-TIMP type), IPR038684 () | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00032168 | |||
| Corresponding_transcript | CBG10925.1 | ||||
| Corresponding_protein | CBP02662 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00032168_A | ||||
| GPL8303_CB6_WBGene00032168_C | |||||
| GPL8303_CB6_WBGene00032168_D | |||||
| GPL8303_CB6_WBGene00032168_E | |||||
| GPL14143_CBG10925_760-819_0.798_3_B | |||||
| GPL14143_CBG10925_823-882_0.789_11_C | |||||
| GPL14143_CBG10925_853-912_0.725_57_A | |||||
| Matching_cDNA | briggsae_GG170|c1_g2_i1 | Inferred_automatically | transcript_builder.pl | ||
| Microarray_results | GPL8303_CB6_WBGene00032168_A | ||||
| GPL8303_CB6_WBGene00032168_C | |||||
| GPL8303_CB6_WBGene00032168_D | |||||
| GPL8303_CB6_WBGene00032168_E | |||||
| GPL14143_CBG10925_760-819_0.798_3_B | |||||
| GPL14143_CBG10925_823-882_0.789_11_C | |||||
| GPL14143_CBG10925_853-912_0.725_57_A | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:26 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to F41C6.1 by best mutual match (eval=0) ; Ortholog F41C6.1 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP02662 ; Gene WBGene00032168 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrX.briggsae.jigsaw.2133 | |||||
| [160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG170|c1_g2_i1-chrX-1'. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
