WormBase Tree Display for CDS: CBG15283
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| CBG15283 | SMap | S_parent | Sequence | cb25.fpc4010 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 89 | ||
| 136 | 390 | ||||
| 436 | 643 | ||||
| 687 | 1327 | ||||
| 1384 | 2632 | ||||
| 2681 | 3124 | ||||
| DB_info | Database | UniProt | UniProtAcc | A8XLH4 | |
| UniProtId | A8XLH4_CAEBR | ||||
| TrEMBL | UniProtAcc | A8XLH4 | |||
| UniProt_GCRP | UniProtAcc | A8XLH4 | |||
| TREEFAM | TREEFAM_ID | TF314096 | |||
| Protein_id | cb25.fpc4010 | CAP33478 | 1 | ||
| DB_remark | CBR-UNC-45 protein; contains similarity to Pfam domain PF11701 (Myosin-binding striated muscle assembly central); contains similarity to Interpro domains IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR011989 (Armadillo-like helical), IPR024660 (UNC-45/Cro1/She4, central domain), IPR016024 (Armadillo-type fold), IPR019734 (Tetratricopeptide repeat) | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00035594 | |||
| Corresponding_transcript | CBG15283.1 | ||||
| Corresponding_protein | CBP03659 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00035594_A | ||||
| GPL14143_CBG15283_2128-2187_0.885_43_A | |||||
| GPL14143_CBG15283_2337-2396_0.898_28_B | |||||
| GPL14143_CBG15283_2519-2578_0.947_3_C | |||||
| Matching_cDNA | briggsae_GG5551|c3_g2_i1 | Inferred_automatically | transcript_builder.pl | ||
| briggsae_GG5551|c3_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL8303_CB6_WBGene00035594_A | ||||
| GPL14143_CBG15283_2128-2187_0.885_43_A | |||||
| GPL14143_CBG15283_2337-2396_0.898_28_B | |||||
| GPL14143_CBG15283_2519-2578_0.947_3_C | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:18 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to F30H5.1 by best mutual match (eval=0) ; Ortholog F30H5.1 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP03659 ; Gene WBGene00035594 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrIII.briggsae.jigsaw.2271 | |||||
| [160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG5551|c3_g2_i1-chrIII-1.extended'. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
