WormBase Tree Display for CDS: CBG15358
expand all nodes | collapse all nodes | view schema
| CBG15358 | SMap | S_parent | Sequence | cb25.fpc4022 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 105 | ||
| 2687 | 2780 | ||||
| 2891 | 2985 | ||||
| 5448 | 5609 | ||||
| 6268 | 6618 | ||||
| 6755 | 7139 | ||||
| 8149 | 8226 | ||||
| 9416 | 9565 | ||||
| 11088 | 11215 | ||||
| DB_info | Database | UniProt | UniProtAcc | A8XM12 | |
| UniProtId | A8XM12_CAEBR | ||||
| TrEMBL | UniProtAcc | A8XM12 | |||
| UniProt_GCRP | UniProtAcc | A8XM12 | |||
| Protein_id | cb25.fpc4022 | CAP33687 | 2 | ||
| DB_remark | CBR-UNC-75 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR035979 (RNA-binding domain superfamily), IPR000504 (RNA recognition motif domain) | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00035657 | |||
| Corresponding_transcript | CBG15358.1 | ||||
| Corresponding_protein | CBP33766 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00035657_A | ||||
| GPL14143_CBG15358_310-369_0.831_46_C | |||||
| GPL14143_CBG15358_508-567_0.863_27_B | |||||
| GPL14143_CBG15358_640-699_0.879_18_A | |||||
| Matching_cDNA | briggsae_GG4282|c5_g3_i2 | Inferred_automatically | transcript_builder.pl | ||
| briggsae_GG4282|c7_g3_i1 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL8303_CB6_WBGene00035657_A | ||||
| GPL14143_CBG15358_310-369_0.831_46_C | |||||
| GPL14143_CBG15358_508-567_0.863_27_B | |||||
| GPL14143_CBG15358_640-699_0.879_18_A | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:13 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to C17D12.2 by best mutual match (eval=1e-114) ; Ortholog C17D12.2 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP03735 ; Gene WBGene00035657 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrI_random.briggsae.jigsaw.362 | |||||
| [160826 gw3] The structure of this CDS has been reviewed by a curator and deemed satisfactory. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
