WormBase Tree Display for CDS: CBG19421
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CBG19421 | SMap | S_parent | Sequence | cb25.fpc4126 | |
---|---|---|---|---|---|
Structure | Source_exons (12) | ||||
DB_info | Database | UniProt | UniProtAcc | A8XVK6 | |
UniProtId | A8XVK6_CAEBR | ||||
TrEMBL | UniProtAcc | A8XVK6 | |||
UniProt_GCRP | UniProtAcc | A8XVK6 | |||
TREEFAM | TREEFAM_ID | TF300393 | |||
Protein_id | cb25.fpc4126 | CAP36674 | 1 | ||
DB_remark | CBR-UNC-41 protein; contains similarity to Pfam domain PF00928 (Adaptor complexes medium subunit family); contains similarity to Interpro domains IPR028565 (Mu homology domain), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily) | ||||
Origin | From_laboratory | CB | |||
Species | Caenorhabditis briggsae | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Visible | Gene | WBGene00038645 | |||
Corresponding_transcript | CBG19421.1 | ||||
Corresponding_protein | CBP44046 | ||||
Corresponding_oligo_set | GPL8303_CB6_WBGene00038645_A | ||||
GPL14143_CBG19421_3626-3685_0.844_67_B | |||||
GPL14143_CBG19421_3830-3889_0.849_60_A | |||||
GPL14143_CBG19421_4030-4089_0.888_32_C | |||||
Matching_cDNA | briggsae_GG1724|c10_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
briggsae_GG1724|c10_g2_i1 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL8303_CB6_WBGene00038645_A | ||||
GPL14143_CBG19421_3626-3685_0.844_67_B | |||||
GPL14143_CBG19421_3830-3889_0.849_60_A | |||||
GPL14143_CBG19421_4030-4089_0.888_32_C | |||||
RNASeq_FPKM (9) | |||||
Last_reviewed | 31 Aug 2016 10:21:21 | WBPerson4025 | |||
Remark | [gffnote] orthologous to C27H6.1 by best mutual match (eval=0) ; Ortholog C27H6.1 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP04486 ; Gene WBGene00038645 | ||||
[160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG1724|c10_g1_i1-chrV-1'. | Curator_confirmed | WBPerson4025 | |||
Method | curated |