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WormBase Tree Display for CDS: CBG19421

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Name Class

CBG19421SMapS_parentSequencecb25.fpc4126
StructureSource_exons (12)
DB_infoDatabaseUniProtUniProtAccA8XVK6
UniProtIdA8XVK6_CAEBR
TrEMBLUniProtAccA8XVK6
UniProt_GCRPUniProtAccA8XVK6
TREEFAMTREEFAM_IDTF300393
Protein_idcb25.fpc4126CAP366741
DB_remarkCBR-UNC-41 protein; contains similarity to Pfam domain PF00928 (Adaptor complexes medium subunit family); contains similarity to Interpro domains IPR028565 (Mu homology domain), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily)
OriginFrom_laboratoryCB
SpeciesCaenorhabditis briggsae
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00038645
Corresponding_transcriptCBG19421.1
Corresponding_proteinCBP44046
Corresponding_oligo_setGPL8303_CB6_WBGene00038645_A
GPL14143_CBG19421_3626-3685_0.844_67_B
GPL14143_CBG19421_3830-3889_0.849_60_A
GPL14143_CBG19421_4030-4089_0.888_32_C
Matching_cDNAbriggsae_GG1724|c10_g1_i1Inferred_automaticallytranscript_builder.pl
briggsae_GG1724|c10_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL8303_CB6_WBGene00038645_A
GPL14143_CBG19421_3626-3685_0.844_67_B
GPL14143_CBG19421_3830-3889_0.849_60_A
GPL14143_CBG19421_4030-4089_0.888_32_C
RNASeq_FPKM (9)
Last_reviewed31 Aug 2016 10:21:21WBPerson4025
Remark[gffnote] orthologous to C27H6.1 by best mutual match (eval=0) ; Ortholog C27H6.1 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP04486 ; Gene WBGene00038645
[160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG1724|c10_g1_i1-chrV-1'.Curator_confirmedWBPerson4025
Methodcurated