WormBase Tree Display for CDS: CBG20190d
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| CBG20190d | SMap | S_parent | Sequence | cb25.fpc4154 | |
|---|---|---|---|---|---|
| Structure | Source_exons (11) | ||||
| DB_info | DB_remark | CBR-UNC-103 protein; contains similarity to Pfam domains PF00027 (Cyclic nucleotide-binding domain), PF00520 (Ion transport protein); contains similarity to Interpro domains IPR018490 (Cyclic nucleotide-binding domain superfamily), IPR005821 (Ion transport domain), IPR003967 (Potassium channel, voltage-dependent, ERG), IPR000595 (Cyclic nucleotide-binding domain), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR027359 (Voltage-dependent channel domain superfamily), IPR014710 (RmlC-like jelly roll fold) | |||
| Origin | From_laboratory | RW | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Partially_confirmed | ||||
| Isoform | Curator_confirmed | WBPerson4025 | |||
| Visible | Gene | WBGene00039233 | |||
| Corresponding_transcript | CBG20190d.1 | ||||
| Corresponding_protein | CBP47341 | ||||
| Corresponding_oligo_set | GPL14143_CBG20190_1725-1784_0.847_33_C | ||||
| GPL14143_CBG20190_1945-2004_0.604_226_B | |||||
| GPL14143_CBG26024_133-192_0.960_1_A | |||||
| Matching_cDNA | briggsae_GG4794|c1_g1_i6 | Inferred_automatically | transcript_builder.pl | ||
| Microarray_results | GPL14143_CBG20190_1725-1784_0.847_33_C | ||||
| GPL14143_CBG20190_1945-2004_0.604_226_B | |||||
| GPL14143_CBG26024_133-192_0.960_1_A | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 23 Sep 2016 14:48:07 | WBPerson4025 | |||
| Remark | [160923 gw3] Merged WBGene00039232 (Cbr-unc-103.1) WBGene00039233 (Cbr-unc-103.2) WBGene00039231 WBGene00087438 based on the RNASeq data. | Curator_confirmed | WBPerson4025 | ||
| From_analysis | RNASeq | ||||
| Method | curated |
