WormBase Tree Display for CDS: CBG21741
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CBG21741 | SMap | S_parent | Sequence | cb25.fpc4260b | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 124 | ||
1407 | 1468 | ||||
1694 | 2428 | ||||
5145 | 5368 | ||||
6290 | 6359 | ||||
DB_info | Database | UniProt | UniProtAcc | A8Y0L1 | |
UniProtId | A8Y0L1_CAEBR | ||||
TrEMBL | UniProtAcc | A8Y0L1 | |||
UniProt_GCRP | UniProtAcc | A8Y0L1 | |||
TREEFAM | TREEFAM_ID | TF351794 | |||
Protein_id | cb25.fpc4260b | CAP38430 | 1 | ||
DB_remark | CBR-UNC-129 protein; contains similarity to Pfam domain PF00019 (Transforming growth factor beta like domain); contains similarity to Interpro domains IPR015615 (Transforming growth factor-beta-related), IPR029034 (Cystine-knot cytokine), IPR001839 (Transforming growth factor-beta, C-terminal) | ||||
Origin | From_laboratory | CB | |||
Species | Caenorhabditis briggsae | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Visible | Gene | WBGene00040440 | |||
Corresponding_transcript | CBG21741.1 | ||||
Corresponding_protein | CBP05164 | ||||
Corresponding_oligo_set | GPL8303_CB6_WBGene00040440_A | ||||
GPL14143_CBG21741_270-329_0.739_100_B | |||||
GPL14143_CBG21741_587-646_0.854_45_C | |||||
GPL14143_CBG21741_1161-1220_0.955_1_A | |||||
Matching_cDNA | briggsae_GG7537|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
Microarray_results | GPL8303_CB6_WBGene00040440_A | ||||
GPL14143_CBG21741_270-329_0.739_100_B | |||||
GPL14143_CBG21741_587-646_0.854_45_C | |||||
GPL14143_CBG21741_1161-1220_0.955_1_A | |||||
RNASeq_FPKM (9) | |||||
Last_reviewed | 31 Aug 2016 10:21:19 | WBPerson4025 | |||
Remark | [gffnote] orthologous to C53D6.2 by best mutual match (eval=0) ; Ortholog C53D6.2 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP05164 ; Gene WBGene00040440 | ||||
[20080722 tb] Modified based on Jigsaw gene ContigchrIV.briggsae.jigsaw.653 | |||||
[160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG7537|c0_g1_i1-chrIV-1'. | Curator_confirmed | WBPerson4025 | |||
Method | curated |