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WormBase Tree Display for CDS: CBG21741

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Name Class

CBG21741SMapS_parentSequencecb25.fpc4260b
StructureSource_exons1124
14071468
16942428
51455368
62906359
DB_infoDatabaseUniProtUniProtAccA8Y0L1
UniProtIdA8Y0L1_CAEBR
TrEMBLUniProtAccA8Y0L1
UniProt_GCRPUniProtAccA8Y0L1
TREEFAMTREEFAM_IDTF351794
Protein_idcb25.fpc4260bCAP384301
DB_remarkCBR-UNC-129 protein; contains similarity to Pfam domain PF00019 (Transforming growth factor beta like domain); contains similarity to Interpro domains IPR015615 (Transforming growth factor-beta-related), IPR029034 (Cystine-knot cytokine), IPR001839 (Transforming growth factor-beta, C-terminal)
OriginFrom_laboratoryCB
SpeciesCaenorhabditis briggsae
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00040440
Corresponding_transcriptCBG21741.1
Corresponding_proteinCBP05164
Corresponding_oligo_setGPL8303_CB6_WBGene00040440_A
GPL14143_CBG21741_270-329_0.739_100_B
GPL14143_CBG21741_587-646_0.854_45_C
GPL14143_CBG21741_1161-1220_0.955_1_A
Matching_cDNAbriggsae_GG7537|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL8303_CB6_WBGene00040440_A
GPL14143_CBG21741_270-329_0.739_100_B
GPL14143_CBG21741_587-646_0.854_45_C
GPL14143_CBG21741_1161-1220_0.955_1_A
RNASeq_FPKM (9)
Last_reviewed31 Aug 2016 10:21:19WBPerson4025
Remark[gffnote] orthologous to C53D6.2 by best mutual match (eval=0) ; Ortholog C53D6.2 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP05164 ; Gene WBGene00040440
[20080722 tb] Modified based on Jigsaw gene ContigchrIV.briggsae.jigsaw.653
[160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG7537|c0_g1_i1-chrIV-1'.Curator_confirmedWBPerson4025
Methodcurated