WormBase Tree Display for CDS: CBG24578d
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CBG24578d | SMap | S_parent | Sequence | cb25.NA_193 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 12 | ||
973 | 1154 | ||||
1225 | 1375 | ||||
1464 | 1571 | ||||
2419 | 2679 | ||||
3338 | 3608 | ||||
4264 | 4490 | ||||
5319 | 5395 | ||||
9439 | 9711 | ||||
10683 | 10782 | ||||
DB_info | DB_remark | CBR-UNC-62 protein; contains similarity to Pfam domains PF05920 (Homeobox KN domain), PF16493 (N-terminal of Homeobox Meis and PKNOX1); contains similarity to Interpro domains IPR008422 (Homeobox KN domain), IPR032453 (Homeobox protein PKNOX/Meis, N-terminal), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily) | |||
Origin | From_laboratory | CB | |||
Species | Caenorhabditis briggsae | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Curator_confirmed | WBPerson4025 | |||
Visible | Gene | WBGene00042654 | |||
Corresponding_transcript | CBG24578d.1 | ||||
Corresponding_protein | CBP41903 | ||||
Corresponding_oligo_set | GPL8303_CB6_WBGene00042654_A | ||||
GPL8303_CB6_WBGene00042654_B | |||||
GPL14143_CBG24578_530-589_0.795_24_C | |||||
GPL14143_CBG24578_2019-2078_0.834_13_B | |||||
GPL14143_CBG24578_2266-2325_0.543_182_A | |||||
Microarray_results | GPL8303_CB6_WBGene00042654_A | ||||
GPL8303_CB6_WBGene00042654_B | |||||
GPL14143_CBG24578_530-589_0.795_24_C | |||||
GPL14143_CBG24578_2019-2078_0.834_13_B | |||||
GPL14143_CBG24578_2266-2325_0.543_182_A | |||||
RNASeq_FPKM (9) | |||||
Last_reviewed | 31 Aug 2016 10:21:21 | WBPerson4025 | |||
Remark | [160826 gw3] This structure has been created based on the Trinity model 'briggsae_GG2356|c5_g1_i5-chrV-1.extended'. | Curator_confirmed | WBPerson4025 | ||
Method | curated |