WormBase Tree Display for CDS: CBG24578e
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| CBG24578e | SMap | S_parent | Sequence | cb25.NA_193 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 12 | ||
| 973 | 1154 | ||||
| 1225 | 1375 | ||||
| 1464 | 1571 | ||||
| 2419 | 2679 | ||||
| 3338 | 3608 | ||||
| 4764 | 4921 | ||||
| 5319 | 5395 | ||||
| 9439 | 9711 | ||||
| 10683 | 10782 | ||||
| DB_info | DB_remark | CBR-UNC-62 protein; contains similarity to Pfam domains PF05920 (Homeobox KN domain), PF16493 (N-terminal of Homeobox Meis and PKNOX1); contains similarity to Interpro domains IPR008422 (Homeobox KN domain), IPR032453 (Homeobox protein PKNOX/Meis, N-terminal), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily) | |||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Isoform | Curator_confirmed | WBPerson4025 | |||
| Visible | Gene | WBGene00042654 | |||
| Corresponding_transcript | CBG24578e.1 | ||||
| Corresponding_protein | CBP39833 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00042654_A | ||||
| GPL8303_CB6_WBGene00042654_B | |||||
| GPL14143_CBG24578_530-589_0.795_24_C | |||||
| GPL14143_CBG24578_2019-2078_0.834_13_B | |||||
| GPL14143_CBG24578_2266-2325_0.543_182_A | |||||
| Matching_cDNA | briggsae_GG2356|c5_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
| Microarray_results | GPL8303_CB6_WBGene00042654_A | ||||
| GPL8303_CB6_WBGene00042654_B | |||||
| GPL14143_CBG24578_530-589_0.795_24_C | |||||
| GPL14143_CBG24578_2019-2078_0.834_13_B | |||||
| GPL14143_CBG24578_2266-2325_0.543_182_A | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:21 | WBPerson4025 | |||
| Remark | [160826 gw3] This structure has been created based on the Trinity model 'briggsae_GG2356|c5_g1_i1-chrV-1'. | Curator_confirmed | WBPerson4025 | ||
| Method | curated |
