Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA03272a

expand all nodes | collapse all nodes | view schema

Name Class

CJA03272aSMapS_parentSequenceCjap.Contig17138
StructureSource_exons1120
174256
302434
8801029
10891166
DB_infoDB_remarkCJP-CPN-1 protein; contains similarity to Pfam domain PF00307 (Calponin homology (CH) domain); contains similarity to Interpro domains IPR036872 (CH domain superfamily), IPR001715 (Calponin homology domain), IPR003096 (Smooth muscle protein/calponin)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00122476
Corresponding_transcriptCJA03272a.1
Corresponding_proteinJA53764
Corresponding_oligo_setGPL14145_CJA03272_213-272_0.857_11_B
GPL14145_CJA03272_283-342_0.816_15_C
Matching_cDNAFF109213Inferred_automaticallytranscript_builder.pl
FF118448Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA03272_213-272_0.857_11_B
GPL14145_CJA03272_283-342_0.816_15_C
RNASeq_FPKMWBls:00000040From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.000596From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.000918From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.00128From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.002551From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.011433From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
2.79729From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig17138.g14139.t1[100726 mh6]
Methodcurated