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WormBase Tree Display for CDS: CJA03272b

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Name Class

CJA03272bSMapS_parentSequenceCjap.Contig17138
StructureSource_exons1120
174256
302434
8801029
10691113
DB_infoDB_remarkCJP-CPN-1 protein; contains similarity to Pfam domain PF00307 (Calponin homology (CH) domain); contains similarity to Interpro domains IPR036872 (CH domain superfamily), IPR001715 (Calponin homology domain), IPR003096 (Smooth muscle protein/calponin)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00122476
Corresponding_transcriptCJA03272b.1
Corresponding_proteinJA44931
Corresponding_oligo_setGPL14145_CJA03272_213-272_0.857_11_B
GPL14145_CJA03272_283-342_0.816_15_C
Microarray_resultsGPL14145_CJA03272_213-272_0.857_11_B
GPL14145_CJA03272_283-342_0.816_15_C
RNASeq_FPKMWBls:00000040From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.192231From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
36.1955From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
49.5675From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
50.6105From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
53.2268From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
53.4919From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
53.5589From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig17138.g14139.t2[100726 mh6]
Methodcurated