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WormBase Tree Display for CDS: CJA03858

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Name Class

CJA03858EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18194
StructureSource_exons173
136614
9831475
15232206
22602366
DB_infoDatabaseTREEFAMTREEFAM_IDTF300821
DB_remarkCJP-UNC-78 protein; contains similarity to Pfam domain PF00400 (WD domain, G-beta repeat); contains similarity to Interpro domains IPR036322 (WD40-repeat-containing domain superfamily), IPR001680 (WD40 repeat), IPR020472 (G-protein beta WD-40 repeat), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00123062
Corresponding_transcriptCJA03858.1
Corresponding_proteinJA44368
Corresponding_oligo_setGPL14145_CJA03858_1278-1337_0.933_3_C
GPL14145_CJA03858_1543-1602_0.939_2_B
GPL14145_CJA03858_1669-1728_0.794_101_A
Matching_cDNAFF111381Inferred_automaticallytranscript_builder.pl
FF111734Inferred_automaticallytranscript_builder.pl
FF115867Inferred_automaticallytranscript_builder.pl
FF129976Inferred_automaticallytranscript_builder.pl
FF135602Inferred_automaticallytranscript_builder.pl
FF135678Inferred_automaticallytranscript_builder.pl
FF137199Inferred_automaticallytranscript_builder.pl
FF137809Inferred_automaticallytranscript_builder.pl
japonica_GG12703|c3_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG12703|c3_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA03858_1278-1337_0.933_3_C
GPL14145_CJA03858_1543-1602_0.939_2_B
GPL14145_CJA03858_1669-1728_0.794_101_A
RNASeq_FPKMWBls:0000004112From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002780.4012From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038100.053From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
85.9697From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:0000041106.217From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
52.6118From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
57.5405From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
58.0588From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
69.8093From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
74.8129From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
86.6253From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
86.8515From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig18194.g27676.t1[100726 mh6]
Methodcurated